Jatropha Genome Database

JcCA0150921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150921.10 + phase: 0 
         (259 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024323001 assembled CDS                                       313   5e-86
GSVIVT01017160001 assembled CDS                                       175   2e-44

>GSVIVT01024323001 assembled CDS
          Length = 229

 Score =  313 bits (802), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 164/184 (89%), Gaps = 4/184 (2%)

Query: 3   ATMTNGEIHTVSTNGGITIEKPFKIFVGYDPREDIAYEVCHHSIMKRSSIPVEICPIIQS 62
           + ++NG+   +  NG +   KPFKIFVGYDPRED+AYEVC HS++KRSSIP+EI PI QS
Sbjct: 16  SLVSNGK-GNLDCNGTV---KPFKIFVGYDPREDLAYEVCCHSLLKRSSIPIEITPIKQS 71

Query: 63  ELRKKNLYWRERGKLESTEFSFSRFLTPYLANYEGWAMFVDCDFLYLADIKELRDLIDDK 122
           +LRK  LYWRERG+ ESTEFSFSRFLTPYLANYEGWAMFVDCDFLYL DIKELRDL+DD 
Sbjct: 72  DLRKSGLYWRERGQTESTEFSFSRFLTPYLANYEGWAMFVDCDFLYLGDIKELRDLVDDN 131

Query: 123 YAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLYNCGHPKNKVLTPEVVNTQTGAFL 182
           YA+MCVQHDYTPKE TKMDG VQTVYPRKNWSSMVLYNCGHPKN+VLTP+VVN+QTGAFL
Sbjct: 132 YAMMCVQHDYTPKEKTKMDGVVQTVYPRKNWSSMVLYNCGHPKNRVLTPDVVNSQTGAFL 191

Query: 183 HRFQ 186
           HRFQ
Sbjct: 192 HRFQ 195


>GSVIVT01017160001 assembled CDS
          Length = 103

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 84/90 (93%)

Query: 100 MFVDCDFLYLADIKELRDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMVLY 159
           MFVDCDFLYLADIKELRDL+DD  AIMCVQHDY PKETTKMDGAVQTVYPRKNWSSMVLY
Sbjct: 1   MFVDCDFLYLADIKELRDLVDDNCAIMCVQHDYAPKETTKMDGAVQTVYPRKNWSSMVLY 60

Query: 160 NCGHPKNKVLTPEVVNTQTGAFLHRFQWLE 189
           NCGHPKN+VLTP+VVN+QTGA+LHRF  L 
Sbjct: 61  NCGHPKNRVLTPDVVNSQTGAYLHRFMLLR 90