Jatropha Genome Database

JcCA0150831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150831.20 + phase: 0 /pseudo/partial/short
         (48 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024692001 assembled CDS                                        61   1e-10

>GSVIVT01024692001 assembled CDS
          Length = 176

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 1   FGLTDPPVANDIFQCMNHGRSTIAGRFAPYSEKCMGK 37
           FG + P +A++IF+CMN GRS +AGRFAP+ EKCMGK
Sbjct: 80  FGQSHPAIASEIFECMNCGRSIMAGRFAPHLEKCMGK 116