Jatropha Genome Database

JcCA0150751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150751.10 - phase: 0 
         (219 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036262001 assembled CDS                                       173   5e-44
GSVIVT01028287001 assembled CDS                                       135   2e-32
GSVIVT01027418001 assembled CDS                                       100   7e-22
GSVIVT01038626001 assembled CDS                                        94   5e-20

>GSVIVT01036262001 assembled CDS
          Length = 188

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 88/103 (85%)

Query: 13  AAYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQ 72
           AAYYP+NVTTDHIQQYLDENKSLILKIVESQNSGKL+ECAENQARLQRNLMYLAAIADSQ
Sbjct: 6   AAYYPSNVTTDHIQQYLDENKSLILKIVESQNSGKLTECAENQARLQRNLMYLAAIADSQ 65

Query: 73  PQPPTMHTQFPSSGIMHPGXXXXXXXXXXXXTPQSLMAARSSM 115
           PQPPTMH QFP SGI+ PG            TPQSL+AARSSM
Sbjct: 66  PQPPTMHAQFPPSGIVQPGAHYMQHQQAQQMTPQSLLAARSSM 108


>GSVIVT01028287001 assembled CDS
          Length = 224

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 77/98 (78%)

Query: 18  NNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQPQPPT 77
           +N+TTDHIQQYLDENKSLILKI+ESQNSGKLSECAENQARLQRNLMYLAAIAD QPQPP+
Sbjct: 19  SNITTDHIQQYLDENKSLILKILESQNSGKLSECAENQARLQRNLMYLAAIADCQPQPPS 78

Query: 78  MHTQFPSSGIMHPGXXXXXXXXXXXXTPQSLMAARSSM 115
           +  QF  + +M PG             PQSLMAAR+ M
Sbjct: 79  LQAQFSPNMVMQPGVNYMQHQQSQQMMPQSLMAARAPM 116


>GSVIVT01027418001 assembled CDS
          Length = 204

 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 60/70 (85%), Gaps = 1/70 (1%)

Query: 14 AYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQP 73
          ++ PNN+TT+ IQ+YLDENK LIL I+++QN GKL+ECA+ QA+LQ+NLMYLAAIAD+QP
Sbjct: 13 SFPPNNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQP 72

Query: 74 Q-PPTMHTQF 82
          Q PPTM  Q 
Sbjct: 73 QAPPTMPPQM 82


>GSVIVT01038626001 assembled CDS
          Length = 195

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 57/70 (81%)

Query: 14 AYYPNNVTTDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADSQP 73
          ++ P  +TT+ IQ+YLDENK LIL I+E+QN GKL+ECA+ QA+LQ+NL+YLAAIAD+QP
Sbjct: 7  SFPPTAITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLIYLAAIADAQP 66

Query: 74 QPPTMHTQFP 83
            PT+  Q P
Sbjct: 67 PAPTVPPQMP 76