Jatropha Genome Database

JcCA0150721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150721.10 - phase: 0 /partial
         (407 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000217001 assembled CDS                                       429   e-120
GSVIVT01025299001 assembled CDS                                        72   5e-13
GSVIVT01010896001 assembled CDS                                        67   2e-11
GSVIVT01035474001 assembled CDS                                        64   1e-10
GSVIVT01012131001 assembled CDS                                        64   2e-10
GSVIVT01038742001 assembled CDS                                        60   2e-09
GSVIVT01019769001 assembled CDS                                        57   1e-08

>GSVIVT01000217001 assembled CDS
          Length = 829

 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/298 (69%), Positives = 233/298 (78%)

Query: 110 GVELSGAQRSFISFAKAVGWMDLANLLREHLQLTCCSAALFVAAAVCPYLIPKPIVKPLQ 169
           G  LS  Q SF+  AKA+ W DLA+ LRE+L L CCS  LF+AAA CPYLIPKP VKPLQ
Sbjct: 100 GSTLSRTQESFLRIAKAIRWADLADFLRENLHLCCCSTGLFLAAAACPYLIPKPAVKPLQ 159

Query: 170 NTFMIIAFPLVGVSASFDALIDVTGGKVNIHVXXXXXXXXXXXXGNALEGGLLLAMFNLA 229
           N F+ +AFPLVGVSAS DALID+TGGKVNIHV            GN LEGGLLLAMFNLA
Sbjct: 160 NAFIFVAFPLVGVSASLDALIDITGGKVNIHVLMALAAFASVFMGNPLEGGLLLAMFNLA 219

Query: 230 HIAEEFFTSRSMVDVKELKENHPASALVLDVNDEKQLDLSDLSYKSVPVHDVKVGSYILV 289
           HIAEE+FTSRS+VDVKELKEN+P  ALVL+VN+ K  + S L+YK VPVHDV+VGSYILV
Sbjct: 220 HIAEEYFTSRSVVDVKELKENYPDFALVLEVNNNKPPNFSHLAYKKVPVHDVEVGSYILV 279

Query: 290 GTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRVPGGARNVDGRMIVKATKMWKE 349
             GE VPVDCEVFQG +TITIEHLTGE+KP+E  VG+R+PGGA N+ G MIVKATK WKE
Sbjct: 280 KDGEFVPVDCEVFQGRSTITIEHLTGEMKPVERTVGERIPGGAHNLSGMMIVKATKTWKE 339

Query: 350 STLNRIVELTEEAQLNKPKLQRWLDEFGERYSKXXXXXXXXXXXXXPFIFKWPFISTS 407
           STL+RIV+LTEEAQLNKPKLQRWLDEFG+ YSK             P +FKWPFISTS
Sbjct: 340 STLSRIVQLTEEAQLNKPKLQRWLDEFGDHYSKVVVVLSIAVAFIGPLLFKWPFISTS 397


>GSVIVT01025299001 assembled CDS
          Length = 850

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 221 LLLAMFNLAHIAEEFFTSRSMVDVKELKENHPASALVLDVNDEKQLDLSDLSYKSVPVHD 280
           +L++   L    E     ++   + +L +  P +A ++ ++DE  + +SD+    +    
Sbjct: 264 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLIALDDEDNV-ISDIE---ISTQL 319

Query: 281 VKVGSYILVGTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRVPGGARNVDGRMI 340
           ++    + +  GE VPVD  V  G + +    +TGE +P+  K GD+V GG  N +G ++
Sbjct: 320 IQRNDILKIVPGEKVPVDGIVVNGQSHVNESMITGEARPIAKKPGDKVIGGTVNENGCIL 379

Query: 341 VKATKMWKESTLNRIVELTEEAQLNKPKLQRWLDEF 376
           VKAT +  E+ L++IV+L E AQL +  +Q+  D+ 
Sbjct: 380 VKATHVGSETALSQIVQLVEAAQLARAPVQKLADQI 415


>GSVIVT01010896001 assembled CDS
          Length = 718

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 218 EGGLLLAMFNLAHIAEEFFTSRSMVDVKELKENHPASALVLDVNDEKQLDLSDLSYKSVP 277
           E G ++ +F +A   E   + ++   +  L    P  A++ D  +             V 
Sbjct: 159 EAGSIVFLFTIAEWLESRASHKATAVMSSLMSIAPQKAVIADTGE------------IVE 206

Query: 278 VHDVKVGSYILVGTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRVPGGARNVDG 337
            + V V + I V TGE +P+D  V +G   +  + LTGE  P+  +    V  G  N++G
Sbjct: 207 ANSVLVDTIIAVKTGEVIPIDGIVVEGKCEVDEKSLTGESFPVAKQKDSTVWAGTINLNG 266

Query: 338 RMIVKATKMWKESTLNRIVELTEEAQLNKPKLQRWLDEFGERYS 381
            + VK T + ++  + ++ +L EEAQ +K K QR++D+  + Y+
Sbjct: 267 YISVKTTALAEDCVVAKMAKLVEEAQNSKSKTQRFIDKCTKFYT 310


>GSVIVT01035474001 assembled CDS
          Length = 888

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%)

Query: 269 SDLSYKSVPVHDVKVGSYILVGTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRV 328
           SD     VP  D++VG  +LV  GE +PVD  V  G + +    LTGE  P+  + G  V
Sbjct: 345 SDAMCIEVPTDDIRVGDSVLVLPGETIPVDGRVLAGRSVVDESMLTGESLPVFKEEGFVV 404

Query: 329 PGGARNVDGRMIVKATKMWKESTLNRIVELTEEAQLNKPKLQRWLDEF 376
             G  N  G + ++A+     ST+++IV + E+AQ     +QR  D  
Sbjct: 405 SAGTINWGGPLRIEASSNGSNSTISKIVSMVEDAQGRAAPIQRLADSI 452


>GSVIVT01012131001 assembled CDS
          Length = 952

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 221 LLLAMFNLAHIAEEFFTSRSMVDVKELKENHPASALVLDVNDEKQLDLSDLSYKSVPVHD 280
           +L+    L    E     ++   +K+L E  PA+AL+L V D+    + +   + +    
Sbjct: 357 MLITFVLLGKYLESLAKGKTSDAIKKLVELAPATALLL-VKDKGGRFIEE---QEIDAML 412

Query: 281 VKVGSYILVGTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRVPGGARNVDGRMI 340
           ++ G  + V  G  VP D  V  GS+ +    +TGE  P+  +V   V GG  N+ G + 
Sbjct: 413 IQPGDVLKVLPGTKVPADGIVMWGSSYVNESMVTGESAPVSKEVNSPVIGGTMNLYGALH 472

Query: 341 VKATKMWKESTLNRIVELTEEAQLNKPKLQRWLD 374
           ++ATK+   + L++I+ L E AQ++K  +Q++ D
Sbjct: 473 IQATKVGSNAVLSQIISLVETAQMSKAPIQKFAD 506


>GSVIVT01038742001 assembled CDS
          Length = 279

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 221 LLLAMFNLAHIAEEFFTSRSMVDVKELKENHPASALVLDVNDEKQLDLSDLSYKSVPVHD 280
           +L+A   L    E+    ++  D+  L    PA A +    D ++      S   VP ++
Sbjct: 115 MLIAFVLLGRNLEQRAKIKATSDMTGLLSILPAKARLFINGDSEEFS----STVEVPCNN 170

Query: 281 VKVGSYILVGTGEAVPVDCEVFQGSATITIEHLTGEIKPMEAKVGDRVPGGARNVDGRMI 340
           + VG  I+V  G+ VP D  V  G +T+     TGE  P+    G  V  G+ N++G + 
Sbjct: 171 LSVGDQIVVLPGDRVPADGIVRAGRSTVDESSFTGEPLPVTKLPGAEVSAGSINLNGTLR 230

Query: 341 VKATKMWKESTLNRIVELTEEAQLNKPKLQRWLDE 375
           V+  +   E+ +  IV L E AQ  +  +QR  D+
Sbjct: 231 VEVRRPGGETAMGDIVRLVEAAQSREAPVQRLADK 265


>GSVIVT01019769001 assembled CDS
          Length = 1902

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 44/68 (64%)

Query: 313 LTGEIKPMEAKVGDRVPGGARNVDGRMIVKATKMWKESTLNRIVELTEEAQLNKPKLQRW 372
           +TGE +P+  + GD V GG  N DG + V+AT++  ES L++IV+L E AQ+ K  +Q++
Sbjct: 2   ITGEARPVAKRKGDTVIGGTVNEDGVLHVEATQVGSESALSQIVQLVESAQMAKAPVQKF 61

Query: 373 LDEFGERY 380
            D   + +
Sbjct: 62  ADRISKYF 69