Jatropha Genome Database

JcCA0150341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150341.10 + phase: 0 /partial
         (112 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003830001 assembled CDS                                       126   2e-30
GSVIVT01003820001 assembled CDS                                       125   4e-30
GSVIVT01003826001 assembled CDS                                       122   3e-29
GSVIVT01003825001 assembled CDS                                       119   4e-28
GSVIVT01003823001 assembled CDS                                       118   6e-28
GSVIVT01003828001 assembled CDS                                       115   5e-27

>GSVIVT01003830001 assembled CDS
          Length = 457

 Score =  126 bits (317), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 1/109 (0%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNI YDG GH+WIALPM  +  W    KYP++RK+  I+ ++ +      KNGGV  VD
Sbjct: 348 PDNILYDGEGHYWIALPMGNSLAWDLALKYPWIRKVVAIMERY-KVRPHIEKNGGVLAVD 406

Query: 62  LEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPALA 110
           LEGK  ++YYDP L  ++SGVKIGN+LYCGSI  PY++RL+L ++ A A
Sbjct: 407 LEGKPTAYYYDPSLSEVTSGVKIGNYLYCGSITKPYMIRLDLHQHAARA 455


>GSVIVT01003820001 assembled CDS
          Length = 820

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNI YDG GH+WIAL       W    KYP +RK+  I+ ++I       KNGG+  V
Sbjct: 273 MPDNILYDGEGHYWIALATGTKGLWDLALKYPSIRKVMAILERYIGR-PHIEKNGGILAV 331

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPA 108
           DLEGK I+HYYDPEL ++SSG+K+G +LYCGS + PYI+RL+L ++ A
Sbjct: 332 DLEGKPIAHYYDPELSMVSSGIKVGKYLYCGSFVKPYIIRLDLDQHAA 379



 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNI YDG GH+WI L       W   FKYP +RK+  I+ K I  + +  KNGGV  +
Sbjct: 710 MPDNILYDGEGHYWIGLATGYNDLWDLAFKYPSIRKVMAIMEKFI-GMPEIEKNGGVLAI 768

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPA 108
           DLEGK I+HYYDP+L L+SSG+KI  +LYCG I+ PY++RL+L ++ A
Sbjct: 769 DLEGKPIAHYYDPKLSLVSSGIKIDKYLYCGFIVKPYMIRLDLDQHAA 816


>GSVIVT01003826001 assembled CDS
          Length = 539

 Score =  122 bits (306), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/109 (52%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNI YDG  H+WIALPM  +  W    KYP++RK+  I+ ++ +      KNGGV  VD
Sbjct: 430 PDNILYDGEEHYWIALPMGNSLAWDLALKYPWIRKVVAIMERY-KVRPHIEKNGGVLAVD 488

Query: 62  LEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPALA 110
           LEGK  ++YYDP L  ++SGVKIGN+LYCGSI  PY++RL+L ++ A A
Sbjct: 489 LEGKPTAYYYDPSLSEVTSGVKIGNYLYCGSITKPYMIRLDLHQHAARA 537


>GSVIVT01003825001 assembled CDS
          Length = 269

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNI YDG GH+WIALPM  +  W    KYP++RK+  I+ ++ +      KNGGV  VD
Sbjct: 160 PDNILYDGEGHYWIALPMGNSLAWDLALKYPWIRKVVAIMERY-KVRPHIEKNGGVLAVD 218

Query: 62  LEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPALAN 111
           LEGK  ++Y+DP L  +SSGVKIGN+LYCGS+  PY++RL+L ++ A A 
Sbjct: 219 LEGKPTAYYHDPGLSEVSSGVKIGNYLYCGSVAKPYMIRLDLHQHVARAT 268


>GSVIVT01003823001 assembled CDS
          Length = 417

 Score =  118 bits (295), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 1/108 (0%)

Query: 1   MPDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVV 60
           MPDNI YDG GH+WI L       W    KYP +RK+  I+ + I    +  KNGGV  +
Sbjct: 307 MPDNILYDGEGHYWIGLATGYNDLWDLALKYPSIRKIMAIMERFIGR-PEFEKNGGVLAI 365

Query: 61  DLEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPA 108
           DLEGK I+HYYDP+L L+SSG+KI  +LYCG ++ PY++RL+L ++ A
Sbjct: 366 DLEGKPIAHYYDPKLSLMSSGIKIDKYLYCGFVVKPYMIRLDLDQHAA 413


>GSVIVT01003828001 assembled CDS
          Length = 175

 Score =  115 bits (288), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 1/110 (0%)

Query: 2   PDNIHYDGHGHFWIALPMEITTFWKAVFKYPFVRKLAGIVSKHIRNIGDTGKNGGVFVVD 61
           PDNI YDG GH+WIALPM  +  W    KYP++RK+  I+ ++ +      KNGGV VVD
Sbjct: 66  PDNILYDGEGHYWIALPMGNSLAWDLALKYPWIRKVVAIMERY-KVRPHMEKNGGVLVVD 124

Query: 62  LEGKLISHYYDPELKLISSGVKIGNHLYCGSIIDPYILRLNLAKYPALAN 111
           LEG   ++YYD  L  ++SGVKIGNHLYCGSI   Y++RL++ ++ A A 
Sbjct: 125 LEGNPTAYYYDLGLSEVTSGVKIGNHLYCGSITTRYMIRLDIHQHAARAT 174