Jatropha Genome Database

JcCA0150301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150301.20 + phase: 0 
         (479 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020650001 assembled CDS                                       599   e-172
GSVIVT01002259001 assembled CDS                                       296   2e-80
GSVIVT01006617001 assembled CDS                                       163   1e-40
GSVIVT01011175001 assembled CDS                                        59   7e-09

>GSVIVT01020650001 assembled CDS
          Length = 558

 Score =  599 bits (1545), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 278/312 (89%), Positives = 294/312 (94%)

Query: 160 ERHHDKWLRDTETYAIKGCFAMTELGHGSNVRGIETVTIYDSNTGEFVINTPCESAQKYW 219
           +RHHDKWLRD+E Y IKGCFAMTELGHGSNVRGIETVT YDS TGEFVIN+PCESAQKYW
Sbjct: 38  KRHHDKWLRDSENYVIKGCFAMTELGHGSNVRGIETVTTYDSKTGEFVINSPCESAQKYW 97

Query: 220 IGGAANHATHTIVFSQLNINGMSEGVHAFIAQIRDADGNIWPNIRIADCGHKIGLNGVDN 279
           IGGAANHATHTIVFSQLNING SEGVHAFIAQIRD DGNI PN+R+ADCGHKIGLNGVDN
Sbjct: 98  IGGAANHATHTIVFSQLNINGKSEGVHAFIAQIRDTDGNICPNVRVADCGHKIGLNGVDN 157

Query: 280 GRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKDADQRFAAFLAPLTSGRVTIAVSAIYS 339
           GRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKD DQRFAAFLAPLTSGRVTIA SA+YS
Sbjct: 158 GRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKDPDQRFAAFLAPLTSGRVTIATSAVYS 217

Query: 340 SKIGLATAIRYSLSRQAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAGNYLKMIY 399
           SK+ LA AIRYSL+R+AFS+TPN PEVLLLDYPSHQRRLLPLLAKTYAMSFA NYLKMIY
Sbjct: 218 SKMSLAIAIRYSLTRRAFSITPNQPEVLLLDYPSHQRRLLPLLAKTYAMSFAANYLKMIY 277

Query: 400 WNRTPETNKTLHVVSSAFKATLTWHDMRTLQECREACGGQGLKTENRVGHLKSEFDVQST 459
             RTPE+NKT+HVVSSAFKA LTWH+MRTLQECREACGGQGLKTENR+G +K E+DVQST
Sbjct: 278 VKRTPESNKTIHVVSSAFKAILTWHNMRTLQECREACGGQGLKTENRIGQMKGEYDVQST 337

Query: 460 FEGDNNVLMQQV 471
           FEGDNNVLMQQV
Sbjct: 338 FEGDNNVLMQQV 349


>GSVIVT01002259001 assembled CDS
          Length = 687

 Score =  296 bits (758), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/330 (47%), Positives = 206/330 (62%), Gaps = 12/330 (3%)

Query: 153 SVFTSFYERHHDKWLRDTETYAIKGCFAMTELGHGSNVRGIETVTIYDSNTGEFVINTPC 212
           SV     ++H DK+    +     GCFAMTEL HGSNV+G++TV  +D  T EF+INTP 
Sbjct: 153 SVLNLGTKKHKDKYYDVIDNLEYPGCFAMTELHHGSNVQGLQTVATFDPITDEFIINTPN 212

Query: 213 ESAQKYWIGGAANHATHTIVFSQL-----NINGMSE-GVHAFIAQIRDADGN-IWPNIRI 265
           + A K+WIG AA H     VF++L     +I G+S+ GVHAFI  IRD   +   P + I
Sbjct: 213 DGAIKWWIGNAAVHGKFATVFARLLLPTHDIKGVSDMGVHAFIVPIRDLKTHQTLPGVEI 272

Query: 266 ADCGHKIGLNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKDADQRFAAFLAPL 325
            DCGHK+GLNGVDNG + F +VRIPR+NLLN   DVS DG+Y S +   ++RFAA L  L
Sbjct: 273 HDCGHKVGLNGVDNGALRFHSVRIPRDNLLNRFGDVSRDGKYTSNLPSINKRFAATLGEL 332

Query: 326 TSGRVTIAVSAIYSSKIGLATAIRYSLSRQAFSVTPNGPEVLLLDYPSHQRRLLPLLAKT 385
             GRV +A S++   K+ +  AIRYSL RQ F   P  PE+ +LDY SHQ +L+P+LA T
Sbjct: 333 VGGRVALAYSSVSVLKVSMTIAIRYSLLRQQFG-PPKQPEISILDYQSHQHKLMPMLAST 391

Query: 386 YAMSFAGNYLKMIYWNRTPETNKTL----HVVSSAFKATLTWHDMRTLQECREACGGQGL 441
           YA  FA  +L  +Y       +  L    H +S+  KA +T +  ++L  CREACGG G 
Sbjct: 392 YAFHFATLHLVQMYSEMKKSHDDQLVGDVHSLSAGLKAYVTSYTAKSLSTCREACGGHGY 451

Query: 442 KTENRVGHLKSEFDVQSTFEGDNNVLMQQV 471
              NR G L+++ D+  TFEGDN VL+QQV
Sbjct: 452 AAVNRFGSLRNDHDIFQTFEGDNTVLLQQV 481


>GSVIVT01006617001 assembled CDS
          Length = 773

 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/283 (34%), Positives = 147/283 (51%), Gaps = 15/283 (5%)

Query: 200 DSNTGEFVINTPCESAQKYWIGGAANHATHTIVFSQLNINGMSEGVHAFIAQIRDADGNI 259
           DS + EFVI++P  ++ K+W GG    +TH +V+++L  +G   GVH FI Q+R  + ++
Sbjct: 265 DSQSDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVHGFIVQLRSLEDHL 324

Query: 260 -WPNIRIADCGHKIG---LNGVDNGRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKDAD 315
             P I I D G K G    N +DNG + FD+VRIPR+ +L  V  V+ +G+    ++   
Sbjct: 325 PLPGITIGDIGMKFGNGGYNSMDNGVLRFDHVRIPRDQMLMRVFQVTREGK---CVQSNV 381

Query: 316 QRFAAFLAPLTSGRVTIAVSAIYSSKIGLATAIRYSLSRQAFSVTPNGPEVLLLDYPSHQ 375
            R   +   +   R TI   A  +    +  A RYS+ R+ F     GPE  ++DY + Q
Sbjct: 382 PRQLVY-GTMVFVRQTIVSDASSALSRAVCIATRYSVVRRQFGSQNGGPETQVIDYKTQQ 440

Query: 376 RRLLPLLAKTYAMSFAGNYLKMIYWNRTP-------ETNKTLHVVSSAFKATLTWHDMRT 428
            RL PLLA  YA  F G +LK +Y + T         T    H  ++  K+  T      
Sbjct: 441 SRLFPLLASAYAFRFVGQWLKWLYMDVTQRLQANDFSTLPEAHACTAGLKSLTTSATADG 500

Query: 429 LQECREACGGQGLKTENRVGHLKSEFDVQSTFEGDNNVLMQQV 471
           ++ECR+ CGG G    + +  L + +    T+EGDN VL+ QV
Sbjct: 501 IEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQV 543


>GSVIVT01011175001 assembled CDS
          Length = 446

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 122/307 (39%), Gaps = 46/307 (14%)

Query: 160 ERHHDKWLRDTETYAIKGCFAMTELGHGSNVRGIETVTIYDSNTGEFVINTPCESAQKYW 219
           E    K+L          C+A+TE  +GS+   ++T        G +++       QK W
Sbjct: 160 EAQKQKYLPSLAQLNTIACWALTEPDYGSDASSLKTTAT--KVEGGWILE-----GQKRW 212

Query: 220 IGGAANHATHTIVFSQLNINGMSEGVHAFIAQIRDADGNIWPNIRIADCGHKIGLNGVDN 279
           IG +   A   I+F++   N  +  ++ +I + + A     P +      +KIGL  V N
Sbjct: 213 IGNS-TFADVLIIFAR---NTTTNQINGYIVK-KGA-----PGLTATKIQNKIGLRIVQN 262

Query: 280 GRIWFDNVRIPRENLLNSVADVSPDGQYLSAIKDADQRFAAFLAPLTSGRVTIAVSAIYS 339
           G I F  V +P E+ L  V          ++ +D ++  A         RV +A   I  
Sbjct: 263 GDIQFKKVFVPDEDRLPGV----------NSFQDTNKVLAV-------SRVMVAWQPIGI 305

Query: 340 SKIGLATAIRYSLSRQAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAGNYLKMIY 399
           S        RY   R+ F          L  +  +Q++L+ +L    AM+  G  L  +Y
Sbjct: 306 SMGAYDMCHRYLKERKQFGAP-------LAAFQINQQKLVEMLGNIQAMTLVGWRLCKLY 358

Query: 400 WNRTPETNKTLHVVSSAFKATLTWHDMRTLQECREACGGQGLKTENRVGHLKSEFDVQST 459
                E  K     +S  KA +T     TL   RE  GG G+  +  V     + +   T
Sbjct: 359 -----EKGKMTPGHASLAKAWITLKARETLALGRELLGGNGILADFLVAKAFCDLEPIYT 413

Query: 460 FEGDNNV 466
           +EG  ++
Sbjct: 414 YEGTYDI 420