Jatropha Genome Database

JcCA0150301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0150301.10 - phase: 0 /partial
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034198001 assembled CDS                                        58   3e-09
GSVIVT01035290001 assembled CDS                                        48   4e-06

>GSVIVT01034198001 assembled CDS
          Length = 693

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 33  FQSDDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQSSVQL 92
            + DD +W+  +VS +     +  V+F  +  E         I    +   R R  SV L
Sbjct: 138 MRKDDSSWHPCRVSLSSTGFGL-IVDFGSQDLEDI-------ISNEEEALARLRIRSVPL 189

Query: 93  QDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCSCTYVLKWHDG 152
           Q +DC  I +G+ V A++  ++ +   FDAMV + L  +H        C CT+V+KW   
Sbjct: 190 QGEDCSLIEEGERVLATHK-SHFKTLSFDAMVEKALRVRHST---RISCRCTFVIKWLHQ 245

Query: 153 SLEGERTFAKISDIC-LTPPGNRVDPSLAAFLK 184
            L+G  +    S I  L      V P +AAFLK
Sbjct: 246 DLKGATSIVPSSSIMKLATQSITVHPMVAAFLK 278


>GSVIVT01035290001 assembled CDS
          Length = 245

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%)

Query: 31  MEFQ---SDDQAWYDVKVSRNDDILTVKYVNFSEEFNETFHVGKFKTIDKVNDFKRRFRQ 87
           +EF+   S D AWYDV     D  LT ++++  E       VG     D+  + K+  R+
Sbjct: 114 LEFEARSSKDGAWYDV-----DTFLTHRFLSSGELEVRVRFVGFGAEEDEWVNVKKAVRE 168

Query: 88  SSVQLQDQDCHKIFQGKTVCASYNFNNGEVKFFDAMVVEVLNEKHKVGXXXXXCSCTYVL 147
            S+ L+  +CHK+  G  V   +     +  ++DA VVE+  + H +      C C +++
Sbjct: 169 RSLPLEHSECHKVKVGDVV-LCFQERRDQAIYYDAHVVEIQRKMHDI----RGCRCLFLI 223

Query: 148 KW-HDGSLE 155
           ++ HD + E
Sbjct: 224 RYDHDNTEE 232