Jatropha Genome Database

JcCA0149941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149941.20 + phase: 0 /partial
         (359 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028252001 assembled CDS                                       560   e-160
GSVIVT01031326001 assembled CDS                                       480   e-136
GSVIVT01037384001 assembled CDS                                        50   2e-06

>GSVIVT01028252001 assembled CDS
          Length = 489

 Score =  560 bits (1442), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 303/358 (84%), Gaps = 1/358 (0%)

Query: 2   ENEDPRNGESVHHQHVTKKPRLACVITESEIQEEFSHHQSGIARINNGSFGSCPQSVLAA 61
           E   P NG+S  H HV+KKP+L+  I+E EI++EFSHHQ GIARINNGSFGSCP S++AA
Sbjct: 30  EQNWPSNGDS-SHNHVSKKPKLSAFISEEEIRQEFSHHQRGIARINNGSFGSCPASIIAA 88

Query: 62  QREWQLKWLQQPDDFYFNTLRKGILHSRAVVKDLINADDVDEISLVDNATTAAAIVLQQI 121
           Q+EWQL++LQQPDDFYFN LRKG+L SR VVK LINAD VDE+SL+DNATTAAAIVLQQI
Sbjct: 89  QKEWQLRFLQQPDDFYFNHLRKGLLESRTVVKGLINADSVDEVSLIDNATTAAAIVLQQI 148

Query: 122 GRSFSEGKFCKNDAVLVFHCTFEAVKKSIQAYVTRAGGSVIEVQLPFPVNSDEKIIAAFR 181
           GR+F++GKF K D V++ HC F++VKKSIQAYVT AGGSVIEVQLPFP+ S E+I++ FR
Sbjct: 149 GRAFAQGKFQKGDVVVMLHCAFQSVKKSIQAYVTGAGGSVIEVQLPFPLTSKEEIVSEFR 208

Query: 182 KELKNGKSNGKRVRLAIIDHITSMPCVVTPIRELVNICREEGVDQVFVDAAHAVGSVKVD 241
           K L+ GKS+G+ VRLAIIDHITSMPCVV P+ ELV ICR+EGVDQVFVDAAHA+GSV VD
Sbjct: 209 KGLEKGKSDGRHVRLAIIDHITSMPCVVVPVEELVKICRQEGVDQVFVDAAHAIGSVPVD 268

Query: 242 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKRXXXXXXXXXXXXXEYGNGLPIESSWIGTR 301
           VKEIGADFYVSNLHKWFFCPPSVAFLYCRK              E+GNGL IESSWIGTR
Sbjct: 269 VKEIGADFYVSNLHKWFFCPPSVAFLYCRKSPLSSEVHHPVVSHEFGNGLAIESSWIGTR 328

Query: 302 DYSSQLAVPAALEFVNRFEGGIYGIIKRNHGKVVEMGKMLAEAWGTNLGAPPEMCAGM 359
           DYSSQL VP+ LEFVNRFEGGI GI+ RNH  VV+MG+MLA++WGTNLGAPPEMCA M
Sbjct: 329 DYSSQLVVPSVLEFVNRFEGGIEGIMMRNHEIVVKMGEMLAKSWGTNLGAPPEMCASM 386


>GSVIVT01031326001 assembled CDS
          Length = 511

 Score =  480 bits (1236), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/355 (66%), Positives = 268/355 (75%), Gaps = 8/355 (2%)

Query: 13  HHQ-------HVTKKPRLACVITESEIQEEFSHHQSGIARINNGSFGSCPQSVLAAQREW 65
           HHQ       H   K     +I+ES+++ EFSHH   IARINNGSFGSCP SV AAQ  W
Sbjct: 71  HHQQNESNGTHNISKKSKPMLISESDLRFEFSHHDPSIARINNGSFGSCPASVTAAQHHW 130

Query: 66  QLKWLQQPDDFYFNTLRKGILHSRAVVKDLINADDVDEISLVDNATTAAAIVLQQIGRSF 125
           QL +L+QPD FYFN L+  IL SR ++KDL+NAD VDEISLVDNATTAAAIVLQQI  +F
Sbjct: 131 QLLFLRQPDHFYFNRLQPAILRSRTLIKDLVNADHVDEISLVDNATTAAAIVLQQIAWAF 190

Query: 126 SEGKFCKNDAVLVFHCTFEAVKKSIQAYVTRAGGSVIEVQLPFPVNSDEKIIAAFRKELK 185
           +EG+F + DAV++ H  + AVKKSI AYV RAGG VIEV LPFPVNS+E+I+  FR+ L 
Sbjct: 191 TEGRFQRGDAVVMLHYAYGAVKKSIHAYVCRAGGQVIEVPLPFPVNSNEEIVDEFRRALM 250

Query: 186 NGKSNGKRVRLAIIDHITSMPCVVTPIRELVNICREEGVDQVFVDAAHAVGSVKVDVKEI 245
            GK+N  RVRLA+IDHITSMP V+ P++ELV ICREEGVDQVFVDAAH +G   VD+KEI
Sbjct: 251 RGKANSGRVRLAVIDHITSMPSVLIPVKELVKICREEGVDQVFVDAAHGIGCTDVDMKEI 310

Query: 246 GADFYVSNLHKWFFCPPSVAFLYCRKR-XXXXXXXXXXXXXEYGNGLPIESSWIGTRDYS 304
           GADFY SNLHKWFFCPPSVAFLYCRK               EYGNGL IES WIGTRDYS
Sbjct: 311 GADFYTSNLHKWFFCPPSVAFLYCRKTPETSPELHHPVVSHEYGNGLAIESGWIGTRDYS 370

Query: 305 SQLAVPAALEFVNRFEGGIYGIIKRNHGKVVEMGKMLAEAWGTNLGAPPEMCAGM 359
           +QL V  A+EF NRFEGGI GI KRNH  VVEMGKMLA AWGTNLG P EMCA +
Sbjct: 371 AQLVVSDAIEFTNRFEGGIEGIKKRNHDGVVEMGKMLASAWGTNLGTPQEMCASL 425


>GSVIVT01037384001 assembled CDS
          Length = 463

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)

Query: 41  SGIARINNGSFGSCPQSVLAAQREWQLKWLQQPDDFYFNTLRKGI--LHSRAV------- 91
           S +  ++N +    P +VL        K LQ   + Y + + +GI  L ++A        
Sbjct: 71  SKLVYLDNAATSQKPTAVL--------KALQNYYEAYNSNVHRGIHFLSAKATDEYESAR 122

Query: 92  --VKDLINADDVDEISLVDNATTAAAIVLQQIGRSFSEGKFCKNDAVLVFHCTFEAVKKS 149
             V   INA +  EI    NAT A  +V    G S         D +++      +    
Sbjct: 123 RKVAAFINASEPGEIIFTRNATEAINLVAYSWGLS----NLKPEDEIVLTVAEHHSAIVP 178

Query: 150 IQAYVTRAGGSVIEVQLPFPVNSDEKIIAAFRKELKNGKSNGKRVRLAIIDHITSMPCVV 209
            Q    + G  +  V L      DE       KE+ +     ++ +L ++ HI+++    
Sbjct: 179 WQLVAQKTGAILKFVNL----TEDEVPDVEKLKEMIS-----RKTKLLVVHHISNVLASA 229

Query: 210 TPIRELVNICREEGVDQVFVDAAHAVGSVKVDVKEIGADFYVSNLHKWFFCPPS-VAFLY 268
            PI ++V+     G  +V VDA  +V  + VDV+ + ADF V++ HK   C P+ + FLY
Sbjct: 230 LPIYDIVHWAHAVGA-KVLVDACQSVPHMAVDVQRLDADFLVASSHK--MCGPTGIGFLY 286

Query: 269 CRK 271
            + 
Sbjct: 287 GKS 289