Jatropha Genome Database

JcCA0149621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.20 - phase: 2 /partial
         (286 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014465001 assembled CDS                                       424   e-119
GSVIVT01015715001 assembled CDS                                       181   4e-46
GSVIVT01014461001 assembled CDS                                       172   1e-43
GSVIVT01015714001 assembled CDS                                       146   1e-35
GSVIVT01014462001 assembled CDS                                       103   7e-23

>GSVIVT01014465001 assembled CDS
          Length = 808

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/267 (77%), Positives = 227/267 (85%), Gaps = 5/267 (1%)

Query: 23  TFCRTAGLTSFPDYLVLHMRKFVMEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLL 82
           T  +TAGLTSFPDYLVLHMRKFVMEEGWVPKKL            SHMRSRG+QPGE+LL
Sbjct: 544 TAVKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSRGIQPGEELL 603

Query: 83  PEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSHMDDP 142
           PE     +VES++L+ANE+IV+QLVSMGFN+LHCQKAAINT N GVEEAMNWLLSHMDDP
Sbjct: 604 PEAVDEGKVESEKLLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSHMDDP 663

Query: 143 DIDVPISQGVLGTEV---VDQSKVDTLISFGFQEELARKALKASGGDIEKATDWIFSNPD 199
           DID PISQ     E    VDQSKVDTLISFGFQE+++R+AL+ASGGDIEKATDWIFSNPD
Sbjct: 664 DIDFPISQEAENAEALSFVDQSKVDTLISFGFQEDISRRALRASGGDIEKATDWIFSNPD 723

Query: 200 ASVSSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQCGHYVAHVFKDGRWTI 259
           A+ SSDMDATTSS  P   DAGLPDGGGRYRL G+VSHIGTSTQCGHYVAH++KDGRW I
Sbjct: 724 AASSSDMDATTSST-PTA-DAGLPDGGGRYRLIGLVSHIGTSTQCGHYVAHIYKDGRWVI 781

Query: 260 FNDNKVGASVNPPKDMGYLYFFERLDS 286
           FND+KVGAS+NPPKDMGYLYFFERL S
Sbjct: 782 FNDDKVGASINPPKDMGYLYFFERLSS 808


>GSVIVT01015715001 assembled CDS
          Length = 206

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 109/141 (77%), Gaps = 5/141 (3%)

Query: 46  MEEGWVPKKLXXXXXXXXXXXXSHMRSRGLQPGEQLLPEGDPSDEVESKQLVANEDIVSQ 105
           ME+GWVPKKL            SHMRS+G+QPGE LLPE     +VES++L+ANE+IV+Q
Sbjct: 1   MEKGWVPKKLYVYIDVPDIIDISHMRSKGIQPGEGLLPEAVDEGKVESEKLLANEEIVAQ 60

Query: 106 LVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSHMDDPDIDVPISQ---GVLGTEVVDQSK 162
           LVSMGFN+LHCQKAAINT N GVEEAMNWLLSHMD  D+DVPISQ    V     VDQSK
Sbjct: 61  LVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSHMD--DLDVPISQETENVEALSFVDQSK 118

Query: 163 VDTLISFGFQEELARKALKAS 183
           VDTLISFGFQE+++ KALKAS
Sbjct: 119 VDTLISFGFQEDISWKALKAS 139


>GSVIVT01014461001 assembled CDS
          Length = 132

 Score =  172 bits (437), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 90/102 (88%), Gaps = 2/102 (1%)

Query: 185 GDIEKATDWIFSNPDASVSSDMDATTSSNLPNPDDAGLPDGGGRYRLFGIVSHIGTSTQC 244
           G I +AT+WIFSNPDA+ SSDMDATTSS  P  D  GLPDGGGRYRL G+VSHIGTSTQC
Sbjct: 33  GKISEATNWIFSNPDAANSSDMDATTSST-PTAD-VGLPDGGGRYRLIGLVSHIGTSTQC 90

Query: 245 GHYVAHVFKDGRWTIFNDNKVGASVNPPKDMGYLYFFERLDS 286
           GHYVAH++KDGRW IFND+KVGAS+NPPKDMGYLYFFERL S
Sbjct: 91  GHYVAHIYKDGRWVIFNDDKVGASINPPKDMGYLYFFERLSS 132


>GSVIVT01015714001 assembled CDS
          Length = 165

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 86/107 (80%), Gaps = 5/107 (4%)

Query: 81  LLPEGDPSDE--VESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTGVEEAMNWLLSH 138
           LL      DE  VES++ +ANE+IV+QLVSMGFN+LHCQKAAINT N GVEEAMNWLLSH
Sbjct: 29  LLSNTRQIDEGKVESEKHLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSH 88

Query: 139 MDDPDIDVPISQGVLGTEV---VDQSKVDTLISFGFQEELARKALKA 182
           MDDPDIDVPISQ     E    VDQSKVDTLISFGFQE+++RK L+A
Sbjct: 89  MDDPDIDVPISQEAENAEALSFVDQSKVDTLISFGFQEDISRKVLRA 135


>GSVIVT01014462001 assembled CDS
          Length = 118

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 58/65 (89%)

Query: 68  SHMRSRGLQPGEQLLPEGDPSDEVESKQLVANEDIVSQLVSMGFNYLHCQKAAINTLNTG 127
           SHMRSRG+QPGE+LLPE     +VES++L+ANE+IV+QLVSMGFN+LHCQKAAINT N G
Sbjct: 43  SHMRSRGIQPGEELLPEAVDEGKVESEKLLANEEIVAQLVSMGFNHLHCQKAAINTSNAG 102

Query: 128 VEEAM 132
           VEEA+
Sbjct: 103 VEEAI 107