Jatropha Genome Database

JcCA0149621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149621.10 + phase: 0 
         (355 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016470001 assembled CDS                                       379   e-105
GSVIVT01032587001 assembled CDS                                       160   8e-40
GSVIVT01007830001 assembled CDS                                       159   2e-39
GSVIVT01032341001 assembled CDS                                        48   6e-06

>GSVIVT01016470001 assembled CDS
          Length = 263

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/243 (75%), Positives = 208/243 (85%)

Query: 1   MKALILAGGFGTHLMPLTVTVPRALVEFANKPIILYQIEALKGVGVSEVVLAINYKQEVI 60
           MKALIL GGFGT L PLT++VP+ LV+FANKP+IL+QIEALK VGVSEVVLAINY+ EV+
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVM 60

Query: 61  LEFLKEHEKKLGIKITCSQETKPLGTAGSLALAKDKLIDGTGEPFFVLNSDVISEYPLME 120
           L FLKE E KLGI ITCSQET+PLGTAG LALA+DKLID +GEPFFVLNSDVISEYP  E
Sbjct: 61  LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120

Query: 121 MIEFHKGHGGQASIMVTEVIDPSKYGVVVIREATGMVQEFAEKPSTFSRNKINAGIYLLN 180
           MIEFHK HGG+ASIMVT+V +PSKYGVVV+ E+ G V  F EKP  F  NKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLN 180

Query: 181 PSILDQIELKATSIEKEVFPRIAEDKKLFAMSLPGFWMDIGQPRDYIAGQRLYLQFLQQN 240
           PS+LD+IEL+ TSIEKEVFP+IA +KKL+AM LPGFWMDIGQPRDYI G RLYL  L++N
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240

Query: 241 SSA 243
             A
Sbjct: 241 MHA 243


>GSVIVT01032587001 assembled CDS
          Length = 418

 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 193/403 (47%), Gaps = 51/403 (12%)

Query: 3   ALILAGG--FGTHLMPLTVTVPRALVEFANKPIILYQIEALKGV-GVSEVVLAINYKQEV 59
           A+I+ GG   GT   PL+    + L   A +P++ + I A K +  ++++ L   Y++  
Sbjct: 10  AVIMVGGPTKGTRFRPLSFNTLKPLFPLAGQPMVHHPISACKRIPNLAQIFLVGFYEERE 69

Query: 60  ILEFLKEHEKKLGIKITCSQETKPLGTAGSLALAKDKLIDGTGEPFFVLNSDVISEYPLM 119
           +  ++     +L + I   +E KP G+AG L   +D +++      F+LN DV   +PL 
Sbjct: 70  LALYVSSVSNELKVPIRYLKEDKPHGSAGGLYYFRDVIMEDAPSHIFLLNCDVCCTFPLP 129

Query: 120 EMIEFHKGHGGQASIMVTEVIDPS--KYGVVVIREATGMVQEFAEKPSTFSRNKINAGIY 177
           +M+  H+ +GG  +++V +V   S  ++G +V    T  +  + EKP TF  + IN G+Y
Sbjct: 130 DMLVEHRRNGGMGTVLVIKVSAESANQFGELVADPTTNELLHYIEKPETFVSDLINCGVY 189

Query: 178 LLNPSIL-----------DQIELKATS------------------IEKEVFPRIAEDKKL 208
           +  P I            D+  L+  S                  +++++   +A  K+L
Sbjct: 190 VFTPDIFTAIQGVSTHREDRASLRRVSSFEALQSATRTHPTDFVRLDQDILSPLAGKKQL 249

Query: 209 FAMSLPGFWMDIGQPRDYIAGQRLYLQFLQQNSSAKLATG-----PKIVGNVLIDESAVI 263
           +      FW  I  P   +    LYL   +  S   LA+G       IVG+V I  SA +
Sbjct: 250 YTYETTDFWEQIKTPGMSLKCSSLYLAQFRYTSPHLLASGDGTKSATIVGDVYIHPSAKV 309

Query: 264 EDGSLIGPNVVIGPDCKIESGVSLSFCTLLRGVHIKKDAFICSSIMGWNSSVGRGARLQ- 322
              + IGPNV I  + +I +GV LS C +L  V IK++A +  +I+GW S +G+ +R+Q 
Sbjct: 310 HPTAKIGPNVSISANVRIGAGVRLSDCIILDDVEIKENAVVMHAIVGWKSFIGKWSRVQA 369

Query: 323 -----------NMTILGEKAKVCDEVFSNGAVLQPHEEMKSSI 354
                       + I+GE   V DEV    +++ P++ +  S+
Sbjct: 370 SLAEGDYNAKLGIAIIGESVTVEDEVVVINSIVLPNKTLNDSV 412


>GSVIVT01007830001 assembled CDS
          Length = 415

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/400 (28%), Positives = 192/400 (48%), Gaps = 48/400 (12%)

Query: 3   ALILAGG--FGTHLMPLTVTVPRALVEFANKPIILYQIEALKGV-GVSEVVLAINYKQEV 59
           A+I+ GG   GT   PL++  P+ L   A +P++ + I   K +  ++++ L   Y++  
Sbjct: 10  AVIMVGGPTKGTRFRPLSLNTPKPLFPLAGQPMVHHPISGCKRIPNLAQIYLVGFYEERE 69

Query: 60  ILEFLKEHEKKLGIKITCSQETKPLGTAGSLALAKDKLIDGTGEPFFVLNSDVISEYPLM 119
              ++     +L + +   +E KP G+AG L   +D +++       +LN DV   +PL 
Sbjct: 70  FALYVSSISSELRVPVRYLKEDKPHGSAGGLYNFRDLIMEDNPSHIVLLNCDVCCSFPLP 129

Query: 120 EMIEFHKGHGGQASIMVTEVI--DPSKYGVVVIREATGMVQEFAEKPSTFSRNKINAGIY 177
           EM+E H  +GG  +I+V +V     S++G +V    T  +  + EKP TF  + IN G+Y
Sbjct: 130 EMLEAHIRYGGMGTILVIKVSAESASQFGELVADPVTNELLHYTEKPETFVSDLINCGVY 189

Query: 178 LLNPSILDQIELKATS-----------------------------IEKEVFPRIAEDKKL 208
           +  P I   I+  +T                              +++++   +A  K+L
Sbjct: 190 IFTPDIFTAIQGVSTQRKERADLRRLSSFEALQSATRSLPKDFVRLDQDILSPLAGKKQL 249

Query: 209 FAMSLPGFWMDIGQPRDYIAGQRLYLQFLQQNSSAKLATG-----PKIVGNVLIDESAVI 263
           +     GFW  I  P   +    LYL   Q      LA+G       I+GNV I  SA +
Sbjct: 250 YTYETMGFWEQIKTPGMSLKCSALYLSQYQFTFPNLLASGDGTKSATIIGNVYIHPSAKV 309

Query: 264 EDGSLIGPNVVIGPDCKIESGVSLSFCTLLRGVHIKKDAFICSSIMGWNSSVGRGARLQ- 322
              + IGPNV I  + +I +GV L  C +L  V IK++A +  +I+GW SSVG+ +R+Q 
Sbjct: 310 HPTAKIGPNVSISANARIGAGVRLISCVILDDVEIKENAVVIHAIVGWKSSVGKWSRVQA 369

Query: 323 --------NMTILGEKAKVCDEVFSNGAVLQPHEEMKSSI 354
                    +TILGE   V DEV    +++ P++ +  S+
Sbjct: 370 GGDYNAKLGITILGEAVAVEDEVVVVNSIVLPNKTLNVSV 409


>GSVIVT01032341001 assembled CDS
          Length = 217

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 7/164 (4%)

Query: 1   MKALILAGGFGTHLMPLTVTVPRALVEFANKPIILYQIEALKGVGVSEV-VLAINYKQEV 59
           ++A++LA  F     P+T+  P+ L+   N P+I Y +  L+  G+ EV V    + ++V
Sbjct: 39  LQAILLADSFAQKFRPITLERPKVLLPLVNVPMIDYTLGWLESAGIEEVFVFCCAHSKQV 98

Query: 60  ILEFLKEHEKKL-GIKITCSQETKPLGTAGSLALAKDK-LIDGTGEPFFVLNSDVISEYP 117
           I      H   L   ++T  +    +    +L L  ++ +I G    F ++  D +S   
Sbjct: 99  IKYLENSHWFSLQHFEVTTIESHNSVCAGDALHLIYERHVIHGD---FVLVTGDTVSNML 155

Query: 118 LMEMIEFHKGHGGQ-ASIMVTEVIDPSKYGVVVIREATGMVQEF 160
           L + ++ HKG   +  ++++T VI  SK  ++  +   G  + F
Sbjct: 156 LTQALQEHKGRRKKDNNVVMTMVIKRSKPSLITHQSRLGTDELF 199