Jatropha Genome Database

JcCA0149501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149501.20 - phase: 0 /partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016156001 assembled CDS                                       151   6e-38
GSVIVT01029276001 assembled CDS                                       144   9e-36
GSVIVT01029274001 assembled CDS                                       133   2e-32

>GSVIVT01016156001 assembled CDS
          Length = 417

 Score =  151 bits (382), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 81/94 (86%)

Query: 13  LQESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYANVAGKRIASGKTQ 72
           ++E+IMP DKK KFL+SE SEF KVIDFY+CSQSDVFVPAISGLFYANVAGKRIA+GK Q
Sbjct: 324 IKENIMPADKKPKFLDSETSEFMKVIDFYICSQSDVFVPAISGLFYANVAGKRIATGKNQ 383

Query: 73  ILVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
           ILVPA I   +AS ++  S YISKKNHLAYSCFC
Sbjct: 384 ILVPATISEATASASDFISSYISKKNHLAYSCFC 417


>GSVIVT01029276001 assembled CDS
          Length = 222

 Score =  144 bits (363), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 77/93 (82%)

Query: 14  QESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYANVAGKRIASGKTQI 73
           +E +MP DKK KFL SE+ EFEKVIDFY+CSQSDVFVP++SGLFYAN  GKRIASGK+QI
Sbjct: 130 KEGVMPADKKAKFLSSENYEFEKVIDFYICSQSDVFVPSVSGLFYANAVGKRIASGKSQI 189

Query: 74  LVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
           LVPA +  +SA   +  SPYIS+KNH AYSCFC
Sbjct: 190 LVPAQVTVSSALNFSFISPYISRKNHFAYSCFC 222


>GSVIVT01029274001 assembled CDS
          Length = 419

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%)

Query: 14  QESIMPEDKKTKFLESEDSEFEKVIDFYLCSQSDVFVPAISGLFYANVAGKRIASGKTQI 73
           +E IM  +KK KFL SE SEFEK IDFY+CS+SDVFVP+ISGLFYANV GKRIASGK+QI
Sbjct: 327 KEGIMLAEKKAKFLSSESSEFEKAIDFYICSESDVFVPSISGLFYANVVGKRIASGKSQI 386

Query: 74  LVPANIPGTSASVTNHFSPYISKKNHLAYSCFC 106
           LVPA +  +S SV+++ S YISK+NH AYSCFC
Sbjct: 387 LVPAQVTVSSTSVSSYISRYISKRNHFAYSCFC 419