Jatropha Genome Database

JcCA0149501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149501.10 - phase: 0 /pseudo/partial
         (833 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016597001 assembled CDS                                       572   e-163

>GSVIVT01016597001 assembled CDS
          Length = 899

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 261/320 (81%), Positives = 296/320 (92%)

Query: 514 SLEIYQNKLLESGKITQEDIDRIHKKVNAILNEEYSNSKDYVSKRSDWLSSHWAGFKSPE 573
           +LEIYQ KLLE G+ TQEDIDR+  KVN ILNEE+  SKDYV  R DWLS++WAGFKSPE
Sbjct: 440 ALEIYQKKLLELGQATQEDIDRVQNKVNTILNEEFLASKDYVPNRRDWLSAYWAGFKSPE 499

Query: 574 QLSRIRNTGVKPDILKEVGKAITFLPDDLKPHKQVKKIYSDRAQMIETGEGIDWALAEAL 633
           Q+SR+RNTGV+P+ILK VGKAIT LP++ K H+ VKKI+  RAQMIETGEGIDWA+ EAL
Sbjct: 500 QISRVRNTGVRPEILKNVGKAITTLPENFKAHRAVKKIFDLRAQMIETGEGIDWAVGEAL 559

Query: 634 AFGTLLLEGNHVRLSGQDVERGTFSHRHAMVHDQESGKKYCPLDHVMVDQDEEMFTVSNS 693
           AF TLL+EGNHVRLSGQDVERGTFSHRH+++HDQE+G++YCPLDHV+++Q+EEMFTVSNS
Sbjct: 560 AFATLLVEGNHVRLSGQDVERGTFSHRHSVIHDQETGERYCPLDHVIMNQNEEMFTVSNS 619

Query: 694 SLSEFGVLGFELGYSMENPNALVMWEAQFGDFSNGAQVMFDQFLSGGESKWLRQSGLVVL 753
           SLSEFGVLGFELGYSMENPNALVMWEAQFGDF+NGAQV+FDQFLS GESKWLRQ+GLVVL
Sbjct: 620 SLSEFGVLGFELGYSMENPNALVMWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVL 679

Query: 754 LPHGYDGQGPEHSSARLERFLQMNDSNPYVVPEMDSLVRKQIQECNWQVVNVTTPANYFH 813
           LPHGYDGQGPEHSSARLERFLQM+D NPYV+PEMD  +RKQIQECNWQ+VNVTTPANYFH
Sbjct: 680 LPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTLRKQIQECNWQIVNVTTPANYFH 739

Query: 814 VLRRQVHREFRKPLVVMSPK 833
           VLRRQ+HREFRKPL+VMSPK
Sbjct: 740 VLRRQIHREFRKPLIVMSPK 759



 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/250 (72%), Positives = 205/250 (82%), Gaps = 7/250 (2%)

Query: 17  KTLSQTASYASRIQCLPWRNRSFHSTIFRAAA-----PNSQHLAGLSDNFLDATSSVYLE 71
           +TL Q  SYA+R + LP +NR FHST+ ++ A     P    L+ L+D+FLD TSSVYLE
Sbjct: 20  RTLCQGGSYATRTRVLPSQNRYFHSTVLKSKAQAAPVPRPVPLSRLTDSFLDGTSSVYLE 79

Query: 72  ELQKAWEVDPNNVDESWDNFFRNFVGQNQKVPSAGVSGQTIQESMSLLLLVRAYQVNGHM 131
           ELQ+AWE DPN+VDESWDNFFRNFVGQ    P  G+SGQTIQESM LLLLVRAYQVNGHM
Sbjct: 80  ELQRAWEADPNSVDESWDNFFRNFVGQAATSP--GISGQTIQESMRLLLLVRAYQVNGHM 137

Query: 132 KAKLDPLDLEEREIPDELDPSFHGFTEADLDREFFLGVWKMSGFLSDNRPVMTLRSILTR 191
           KAKLDPL LEEREIPD+LDP+ +GFTEADLDREFFLGVW+M+GFLS+NRPV TLR+ILTR
Sbjct: 138 KAKLDPLGLEEREIPDDLDPALYGFTEADLDREFFLGVWRMAGFLSENRPVQTLRAILTR 197

Query: 192 LEQAYCGHVGYEYMHIDDSAKCNWLRHKIETPVPMTYNQDRLELLLDRLTWSTQFENFLA 251
           LEQAYCG +GYEYMHI D  KCNWLR KIETP P  YNQ R E++LDRL WSTQFENFLA
Sbjct: 198 LEQAYCGSIGYEYMHIADRDKCNWLRDKIETPTPRQYNQQRREVILDRLIWSTQFENFLA 257

Query: 252 TKMKAAKRFG 261
           TK  AAKR G
Sbjct: 258 TKWTAAKRGG 267



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 338 LGTSYDRPTRAGKRIHLSLVANPSHLEAVDPLVLGKT 374
           L T +    R G+RIHLSLVANPSHLEAVDP+V+GKT
Sbjct: 256 LATKWTAAKRGGRRIHLSLVANPSHLEAVDPVVVGKT 292