Jatropha Genome Database

JcCA0149451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149451.20 + phase: 0 /partial
         (430 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031326001 assembled CDS                                       637   0.0  
GSVIVT01028252001 assembled CDS                                       574   e-164

>GSVIVT01031326001 assembled CDS
          Length = 511

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/417 (73%), Positives = 351/417 (84%), Gaps = 4/417 (0%)

Query: 14  DRCNSTTIVTKKPKLSSPIHITDSEIQSEFSHHDPDVARINNGSFGSCPQSVISAQRSLQ 73
           +  N T  ++KK   S P+ I++S+++ EFSHHDP +ARINNGSFGSCP SV +AQ   Q
Sbjct: 75  NESNGTHNISKK---SKPMLISESDLRFEFSHHDPSIARINNGSFGSCPASVTAAQHHWQ 131

Query: 74  LLFLRQPDEFYFNHLKPGILRSRSIVKSLINADHVDEVSLVDNATTAAAIVLQKIARDFS 133
           LLFLRQPD FYFN L+P ILRSR+++K L+NADHVDE+SLVDNATTAAAIVLQ+IA  F+
Sbjct: 132 LLFLRQPDHFYFNRLQPAILRSRTLIKDLVNADHVDEISLVDNATTAAAIVLQQIAWAFT 191

Query: 134 EGRFNKGDGVVMLHYAYGSVKKSVEAYVKRAGGHVIEVQLPFPVKSREEIVTEFRKALER 193
           EGRF +GD VVMLHYAYG+VKKS+ AYV RAGG VIEV LPFPV S EEIV EFR+AL R
Sbjct: 192 EGRFQRGDAVVMLHYAYGAVKKSIHAYVCRAGGQVIEVPLPFPVNSNEEIVDEFRRALMR 251

Query: 194 GKENGRKVRLAVIDHVTSMPSVVIPVKDLVKICREEFVDQVFVDAAHGIGCVDVDMKEIG 253
           GK N  +VRLAVIDH+TSMPSV+IPVK+LVKICREE VDQVFVDAAHGIGC DVDMKEIG
Sbjct: 252 GKANSGRVRLAVIDHITSMPSVLIPVKELVKICREEGVDQVFVDAAHGIGCTDVDMKEIG 311

Query: 254 ADFYTSNLHKWFFCPASVAFLYCRKWSNKGDDDLHHPVVSYEYGNGLAMESAWIGNRDYS 313
           ADFYTSNLHKWFFCP SVAFLYCRK + +   +LHHPVVS+EYGNGLA+ES WIG RDYS
Sbjct: 312 ADFYTSNLHKWFFCPPSVAFLYCRK-TPETSPELHHPVVSHEYGNGLAIESGWIGTRDYS 370

Query: 314 AQLVVPSVLEFINRFPGGIEEIKKRNHERVVDMGEMLVKAWGTHLGCPPEMCGSMIMVGL 373
           AQLVV   +EF NRF GGIE IKKRNH+ VV+MG+ML  AWGT+LG P EMC S+IMVGL
Sbjct: 371 AQLVVSDAIEFTNRFEGGIEGIKKRNHDGVVEMGKMLASAWGTNLGTPQEMCASLIMVGL 430

Query: 374 PACLGILSESDALNLRTHLRDKFGIEVPIYFRDPKDGEVSPITGYARISYQVYNKVE 430
           P  LGI S+SDA+ LR HLR+ FG+EVPIY+R PKDGEV+PITGYARISYQVYN ++
Sbjct: 431 PVSLGISSDSDAMKLRKHLRENFGVEVPIYYRHPKDGEVNPITGYARISYQVYNTID 487


>GSVIVT01028252001 assembled CDS
          Length = 489

 Score =  574 bits (1480), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/416 (67%), Positives = 340/416 (81%), Gaps = 7/416 (1%)

Query: 12  NGDRCNSTTIVTKKPKLSSPIHITDSEIQSEFSHHDPDVARINNGSFGSCPQSVISAQRS 71
           NGD  +S   V+KKPKLS+   I++ EI+ EFSHH   +ARINNGSFGSCP S+I+AQ+ 
Sbjct: 36  NGD--SSHNHVSKKPKLSA--FISEEEIRQEFSHHQRGIARINNGSFGSCPASIIAAQKE 91

Query: 72  LQLLFLRQPDEFYFNHLKPGILRSRSIVKSLINADHVDEVSLVDNATTAAAIVLQKIARD 131
            QL FL+QPD+FYFNHL+ G+L SR++VK LINAD VDEVSL+DNATTAAAIVLQ+I R 
Sbjct: 92  WQLRFLQQPDDFYFNHLRKGLLESRTVVKGLINADSVDEVSLIDNATTAAAIVLQQIGRA 151

Query: 132 FSEGRFNKGDGVVMLHYAYGSVKKSVEAYVKRAGGHVIEVQLPFPVKSREEIVTEFRKAL 191
           F++G+F KGD VVMLH A+ SVKKS++AYV  AGG VIEVQLPFP+ S+EEIV+EFRK L
Sbjct: 152 FAQGKFQKGDVVVMLHCAFQSVKKSIQAYVTGAGGSVIEVQLPFPLTSKEEIVSEFRKGL 211

Query: 192 ERGKENGRKVRLAVIDHVTSMPSVVIPVKDLVKICREEFVDQVFVDAAHGIGCVDVDMKE 251
           E+GK +GR VRLA+IDH+TSMP VV+PV++LVKICR+E VDQVFVDAAH IG V VD+KE
Sbjct: 212 EKGKSDGRHVRLAIIDHITSMPCVVVPVEELVKICRQEGVDQVFVDAAHAIGSVPVDVKE 271

Query: 252 IGADFYTSNLHKWFFCPASVAFLYCRKWSNKGDDDLHHPVVSYEYGNGLAMESAWIGNRD 311
           IGADFY SNLHKWFFCP SVAFLYCRK  +    ++HHPVVS+E+GNGLA+ES+WIG RD
Sbjct: 272 IGADFYVSNLHKWFFCPPSVAFLYCRK--SPLSSEVHHPVVSHEFGNGLAIESSWIGTRD 329

Query: 312 YSAQLVVPSVLEFINRFPGGIEEIKKRNHERVVDMGEMLVKAWGTHLGCPPEMCGSMIMV 371
           YS+QLVVPSVLEF+NRF GGIE I  RNHE VV MGEML K+WGT+LG PPEMC SMIMV
Sbjct: 330 YSSQLVVPSVLEFVNRFEGGIEGIMMRNHEIVVKMGEMLAKSWGTNLGAPPEMCASMIMV 389

Query: 372 GLPACLGILSESDALNLRTHLRDKFGIEVPIYFRDPKDGEVSPITGYARISYQVYN 427
           GLP+ L I SE DA+ LR++LR   GIEVP++++ P D  ++ +T  A +  Q+ N
Sbjct: 390 GLPSRLFISSEEDAMRLRSYLRQHHGIEVPLHYQAPSDF-ITVLTIIASLGMQLIN 444