Jatropha Genome Database

JcCA0149451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149451.10 - phase: 0 /TE/pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031329001 assembled CDS                                       243   5e-65
GSVIVT01017701001 assembled CDS                                       224   3e-59
GSVIVT01037685001 assembled CDS                                       218   1e-57
GSVIVT01012684001 assembled CDS                                       191   2e-49
GSVIVT01031327001 assembled CDS                                       178   1e-45

>GSVIVT01031329001 assembled CDS
          Length = 502

 Score =  243 bits (619), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 148/199 (74%), Gaps = 8/199 (4%)

Query: 1   MRNRILSVAFCLWASAWLLLPAGSDGLMRISLKKRRLDVDSIKAARIAREEGKSRIGANN 60
           MR  ++  AFCLWA    LLP  S G +RI LKKR LD ++++ ARIA+ +GK  IG   
Sbjct: 1   MRQGVVWAAFCLWALICPLLPVYSHGSVRIGLKKRPLDFNNMRTARIAQMQGK--IGGGV 58

Query: 61  MLR-----SSDIHIVPLKNYLDAQYYGEIGIGSPPQNFTVIFDTGSSNLWIPSSKCYFSL 115
           M +       D   V LKNYLDAQY+GEIGIG+PPQNFTV+FDTGSSNLW+PSSKCYFS+
Sbjct: 59  MSKYHGFDDPDGEFVSLKNYLDAQYFGEIGIGTPPQNFTVVFDTGSSNLWVPSSKCYFSI 118

Query: 116 ACYFHSRYKSSRSKTYVQNGTSCEIQYGSGSIAGFFSQDNVLVGDLIVKDQVFIEATREG 175
           AC+FH++YK+  S TY + G   EI YGSGSI+GFFSQDNV VG L+VKDQVFIEATREG
Sbjct: 119 ACFFHNKYKARLSSTYTKIGRPGEIHYGSGSISGFFSQDNVEVGSLVVKDQVFIEATREG 178

Query: 176 SLSFILD*NLTGILGLGFQ 194
           SL+F L     GI+GLGFQ
Sbjct: 179 SLTFALA-KFDGIMGLGFQ 196


>GSVIVT01017701001 assembled CDS
          Length = 500

 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 118/213 (55%), Positives = 154/213 (72%), Gaps = 11/213 (5%)

Query: 1   MRNRILSVAFCL-WASAWLL-LPAGSDGLMRISLKKRRLDVDSIKAARIAREEGKSRIG- 57
           MR + + VA CL WA A  L L   SDGL+RI LKK+ LD+  + AARI R  G    G 
Sbjct: 1   MRLKYILVANCLLWAWACCLALDDSSDGLVRIGLKKKPLDLARLHAARITRGNGFHAQGL 60

Query: 58  ---ANNMLRSSDIHIVPLKNYLDAQYYGEIGIGSPPQNFTVIFDTGSSNLWIPSSKCYFS 114
               +N  +++ ++   LKNY+DAQYYGEIGIGSPPQ F+V+FDTGSSNLW+PSSKCYFS
Sbjct: 61  GKVDDNYPKANTVY---LKNYMDAQYYGEIGIGSPPQTFSVVFDTGSSNLWVPSSKCYFS 117

Query: 115 LACYFHSRYKSSRSKTYVQNGTSCEIQYGSGSIAGFFSQDNVLVGDLIVKDQVFIEATRE 174
           +ACYFH+RY++  S+TY +NG  C+I YGSGSI+GFFSQD+V +G++++K+QVF EAT+E
Sbjct: 118 IACYFHARYRAVLSRTYSKNGRHCKINYGSGSISGFFSQDHVQIGEIVIKNQVFTEATKE 177

Query: 175 GSLSFILD*NLTGILGLGFQEYRRLGMLFLVWY 207
           G  +F L     GILGLGFQ    +G +  +WY
Sbjct: 178 GLFAFSLA-QFDGILGLGFQN-ASVGKIPPIWY 208


>GSVIVT01037685001 assembled CDS
          Length = 514

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 150/218 (68%), Gaps = 14/218 (6%)

Query: 1   MRNRILSVAFCLWASAWLLLP---AGSDGLMRISLKKRRLDVDSIKAARIAREEGKSRIG 57
           M  +  +VA  L+ S  +  P   A   GL+RI LKKR  D  +  AARI  ++G++ +G
Sbjct: 1   MGTKCRTVAVALFLSILMFSPEFSASDGGLVRIGLKKRAFDQTNRLAARIESKQGEA-LG 59

Query: 58  AN--------NMLRSSDIHIVPLKNYLDAQYYGEIGIGSPPQNFTVIFDTGSSNLWIPSS 109
            +        N   S   ++V L NY+DAQY+GEI IG+PPQ FTVIFDTGSSNLW+PSS
Sbjct: 60  TSIRKYNLHGNAAGSKHTYVVALHNYMDAQYFGEISIGTPPQKFTVIFDTGSSNLWVPSS 119

Query: 110 KCYFSLACYFHSRYKSSRSKTYVQNGTSCEIQYGSGSIAGFFSQDNVLVGDLIVKDQVFI 169
           KCYFS+ACYFHS+YKSS+S TY +NGTS +I YG+G+I+GFFS+D+V VGDL V +Q FI
Sbjct: 120 KCYFSVACYFHSKYKSSQSSTYKKNGTSADIHYGTGAISGFFSKDDVKVGDLAVINQEFI 179

Query: 170 EATREGSLSFILD*NLTGILGLGFQEYRRLGMLFLVWY 207
           EAT+E S++F L     GILGLGFQE   +G    VWY
Sbjct: 180 EATKEPSITFALA-KFDGILGLGFQEI-SVGNAVPVWY 215


>GSVIVT01012684001 assembled CDS
          Length = 429

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 110/132 (83%), Gaps = 2/132 (1%)

Query: 76  LDAQYYGEIGIGSPPQNFTVIFDTGSSNLWIPSSKCYFSLACYFHSRYKSSRSKTYVQNG 135
           +DAQY+GEIGIG+PPQ FTVIFDTGSSNLW+PSSKCYFS+ CYFHS+YKSS+S TY +NG
Sbjct: 1   MDAQYFGEIGIGTPPQTFTVIFDTGSSNLWVPSSKCYFSVPCYFHSKYKSSQSSTYRKNG 60

Query: 136 TSCEIQYGSGSIAGFFSQDNVLVGDLIVKDQVFIEATREGSLSFILD*NLTGILGLGFQE 195
            S +I YG+G+I+GFFS+DNV VGDL+VK+Q FIEATRE S++F++     GILGLGFQE
Sbjct: 61  KSADIHYGTGAISGFFSEDNVKVGDLVVKNQEFIEATREPSVTFLVA-KFDGILGLGFQE 119

Query: 196 YRRLGMLFLVWY 207
              +G    VWY
Sbjct: 120 I-SVGNAVPVWY 130


>GSVIVT01031327001 assembled CDS
          Length = 430

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 2/132 (1%)

Query: 76  LDAQYYGEIGIGSPPQNFTVIFDTGSSNLWIPSSKCYFSLACYFHSRYKSSRSKTYVQNG 135
           +DAQYYGEIGIG+PPQNFTV+FDTGS+NLW+PS+KC+FS+AC FHS+Y S  S TY+  G
Sbjct: 1   MDAQYYGEIGIGTPPQNFTVVFDTGSANLWVPSTKCHFSIACLFHSKYNSRLSTTYIDLG 60

Query: 136 TSCEIQYGSGSIAGFFSQDNVLVGDLIVKDQVFIEATREGSLSFILD*NLTGILGLGFQE 195
              EI YGSGSI+G FSQDNV VG + +K+QVFIEATRE SL F+L     GILGLGF+E
Sbjct: 61  KEGEIHYGSGSISGVFSQDNVQVGSMAIKNQVFIEATREASLVFVLG-KFDGILGLGFEE 119

Query: 196 YRRLGMLFLVWY 207
              +G    VWY
Sbjct: 120 I-VVGNATPVWY 130