Jatropha Genome Database

JcCA0149441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.20 - phase: 0 /partial
         (81 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008024001 assembled CDS                                       119   2e-28

>GSVIVT01008024001 assembled CDS
          Length = 324

 Score =  119 bits (299), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 67/84 (79%), Gaps = 3/84 (3%)

Query: 1   YDAAILHTSFARLLGHPKASHLE---ASNELQFFHELVARLNNRIKGSEAVISELWYVEE 57
           YD AILHTSFARLLG PK S  E   AS++LQFFHELV RLNN I+G EA +SELWYVEE
Sbjct: 229 YDNAILHTSFARLLGPPKFSPTELHKASDQLQFFHELVTRLNNIIRGFEADVSELWYVEE 288

Query: 58  YDVLALALNGRMNIRKFQLGCKTT 81
           YDVLALALNGRM +R+F+L    +
Sbjct: 289 YDVLALALNGRMKVRRFKLAASKS 312