Jatropha Genome Database

JcCA0149441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149441.10 - phase: 0 /pseudo/partial
         (315 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011386001 assembled CDS                                       182   2e-46
GSVIVT01008025001 assembled CDS                                       163   9e-41
GSVIVT01024084001 assembled CDS                                        76   2e-14
GSVIVT01018777001 assembled CDS                                        64   8e-11

>GSVIVT01011386001 assembled CDS
          Length = 328

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 132/198 (66%), Gaps = 7/198 (3%)

Query: 117 KSKGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQ 176
           K+ GKVPK IHKAEREKLKR+                Q NNGKA +L++AT+LL+D L Q
Sbjct: 111 KNPGKVPKKIHKAEREKLKRDHLNVLFLELGNILDSAQQNNGKACVLTDATRLLRDLLAQ 170

Query: 177 IECLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKPDLNAPPPE 236
           ++CLK++NA+LLSESHYV+ EKNEL+E+NS L+ QI+ LQSELE R ++SKP  N+ P +
Sbjct: 171 VDCLKRDNAALLSESHYVSMEKNELREDNSALEAQIKKLQSELEER-IRSKPAWNSDPSQ 229

Query: 237 FEQPELTSHFPGDSLRLPTADASLQQT---SAVFVIPFHHDLQTY---SVTASNVSKPHA 290
            +        P D L  P  D + Q       VFV+P H DLQT+   +  ASNVS+PHA
Sbjct: 230 LDHNSTAPQLPEDHLMFPVTDHASQTAPVVGPVFVVPLHQDLQTFPQPNAAASNVSRPHA 289

Query: 291 RYPNPADSWPSQLLGEQV 308
           RYP+P+D WPSQ+L  Q+
Sbjct: 290 RYPSPSDCWPSQILDSQL 307


>GSVIVT01008025001 assembled CDS
          Length = 195

 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 105/155 (67%)

Query: 112 GCCHGKSKGKVPKGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLK 171
            C    ++ KVPK +HKA REKLKRE               T  N GKA IL EA +L+K
Sbjct: 24  SCPTKNNQRKVPKRVHKAVREKLKREHLHDLFLELANALDLTHQNTGKAFILCEAIRLVK 83

Query: 172 DFLVQIECLKKENASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARMVQSKPDLN 231
           D + QI+CLKKENA+L SESHYV  EKNEL++ENSVL+ QI+ LQ+E++ R    KPDLN
Sbjct: 84  DTIAQIDCLKKENAALFSESHYVNIEKNELRDENSVLEDQIDKLQTEIKERAALYKPDLN 143

Query: 232 APPPEFEQPELTSHFPGDSLRLPTADASLQQTSAV 266
           + P EF+Q E+T H PG SLR P+AD +LQQ+S V
Sbjct: 144 SAPSEFQQTEVTQHCPGSSLRFPSADQALQQSSVV 178


>GSVIVT01024084001 assembled CDS
          Length = 329

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 60/100 (60%)

Query: 124 KGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKE 183
           + + KA+REKL+R++               +P N KA+ILS+  +LLKD   Q+E LK E
Sbjct: 46  RKVQKADREKLRRDRLNEQFIELGNALDPDRPKNDKATILSDTIQLLKDLTAQVEKLKAE 105

Query: 184 NASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARM 223
           NASL  ES  +T EKN+L+EE + L++  E L  + + R+
Sbjct: 106 NASLNEESRELTQEKNDLREEKASLKSATENLNVQYQQRL 145


>GSVIVT01018777001 assembled CDS
          Length = 326

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%)

Query: 124 KGIHKAEREKLKREQXXXXXXXXXXXXXXTQPNNGKASILSEATKLLKDFLVQIECLKKE 183
           + + KA+REKL+R++               +P N KA+IL++  ++LKD   ++  LK E
Sbjct: 50  RKVQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILADTIQMLKDLTAEVNRLKVE 109

Query: 184 NASLLSESHYVTTEKNELKEENSVLQTQIEGLQSELEARM 223
            A+L  ES  +  EKNEL+EE   L++ I+ L  + + R+
Sbjct: 110 CAALSEESRELVQEKNELREEKVALKSDIDNLNVQYQQRL 149