Jatropha Genome Database

JcCA0149411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149411.10 - phase: 0 /partial
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036290001 assembled CDS                                       416   e-117
GSVIVT01037466001 assembled CDS                                       131   4e-31

>GSVIVT01036290001 assembled CDS
          Length = 871

 Score =  416 bits (1068), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/255 (78%), Positives = 220/255 (86%), Gaps = 10/255 (3%)

Query: 1   AAVLKEEFNIDLRVMGIIGSRRMLLSEVGIDLSRWRELAMENSEVADLEKFTHHIRRNHF 60
           AAVLKE+FNIDLRVMGI GSR MLLS+ GIDLSRWREL  E  EV D+ KF +H+  NHF
Sbjct: 535 AAVLKEDFNIDLRVMGITGSRTMLLSDSGIDLSRWRELIKEKGEVGDMHKFVNHVHGNHF 594

Query: 61  IPNTVLVDCTADSKIATCYYDWLRKGIHVITPNKKANSGPLDQYLKLRALQRQSYTHYFY 120
           IPNT LVDCTADS +A+ Y++WLRKGIHVITPNKKANSGPLDQYLKLRALQRQSYTHYFY
Sbjct: 595 IPNTALVDCTADSNVASHYHEWLRKGIHVITPNKKANSGPLDQYLKLRALQRQSYTHYFY 654

Query: 121 EATVGAGLPIISTLRGLLETGDKILQIEGIFSGTLSYIFNNFIGPKSFSEVVAEAKQAGY 180
           EATVGAGLPIISTLRGLLETGDKIL+IEGIFSGTLSYIFNNF G + FSEVV EAKQAGY
Sbjct: 655 EATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFKGTRRFSEVVMEAKQAGY 714

Query: 181 TEPDPRDDLSGTDVARKVIILARESGLKLELSDIP----------ACVSAEEYMKQLPQF 230
           TEPDPRDDLSGTDVARKVIILARESGLKLEL+D P          A  SA+E+M+QLPQ+
Sbjct: 715 TEPDPRDDLSGTDVARKVIILARESGLKLELADTPVQSLVPEPLRATASADEFMQQLPQY 774

Query: 231 DKDMAKERQKAEHSG 245
           D+D+AK+ Q AE +G
Sbjct: 775 DEDLAKQLQDAEDAG 789


>GSVIVT01037466001 assembled CDS
          Length = 377

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 108/193 (55%), Gaps = 16/193 (8%)

Query: 65  VLVDCTADSKIATCYYDWLRKGIHVITPNKKANSGPLDQYLKLRALQRQSYTHYFYEATV 124
           V+VDC+A S+        +  G  ++  NKK  +  +D Y KL A  R+      YE+TV
Sbjct: 112 VVVDCSASSETMGVLNQAVDLGCCIVLANKKPLTAAMDDYDKLVAHPRR----IRYESTV 167

Query: 125 GAGLPIISTLRGLLETGDKILQIEGIFSGTLSYIFNNFIGPKSFSEVVAEAKQAGYTEPD 184
           GAGLP+I++L  +L +GD I  I    SGTL Y+ +   G K FS+VV +AK  GYTEPD
Sbjct: 168 GAGLPVIASLNRILSSGDPIRCIVACLSGTLGYVMSEVEGGKPFSQVVKDAKSLGYTEPD 227

Query: 185 PRDDLSGTDVARKVIILARESGLKLELSDI-----------PACVSAEEYMKQ-LPQFDK 232
           PRDDLSG DVARK +IL+R  G ++ L  +           P  +S E+++   L   D 
Sbjct: 228 PRDDLSGMDVARKALILSRLLGRRVNLDSLKIESLYPEEMGPNMMSLEDFLSSGLLLLDN 287

Query: 233 DMAKERQKAEHSG 245
           D+ +  QKA   G
Sbjct: 288 DIQERVQKAALDG 300