Jatropha Genome Database

JcCA0149281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149281.10 + phase: 0 
         (885 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033428001 assembled CDS                                      1143   0.0  
GSVIVT01021587001 assembled CDS                                        92   2e-18
GSVIVT01005970001 assembled CDS                                        90   4e-18

>GSVIVT01033428001 assembled CDS
          Length = 1363

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/919 (63%), Positives = 694/919 (75%), Gaps = 74/919 (8%)

Query: 1   MAVSEEECXXXXXXXXXXXATLNGTHYLAKCVLRGSAVLQVVYGHFRSSSSNDIIFGKET 60
           MAV+EEEC           A+ N +HYLAKCVL+GS VL VV+G  RS S +DI+FGKET
Sbjct: 1   MAVAEEECSSTKSRS----ASNNDSHYLAKCVLKGSVVLHVVHGRIRSPSFSDIVFGKET 56

Query: 61  XXXXXXXXXXXXXXXXCEQPIFGTIKDLAVIPSNGKLHARS--PQEKDLLAVVSDSGKLS 118
                           CEQ +FGTIKDLAV+  N + H ++   Q +DLL VVSDSGKLS
Sbjct: 57  SLELVIIGEDGIVQSVCEQAVFGTIKDLAVLRWNERFHHQNLQMQGRDLLVVVSDSGKLS 116

Query: 119 FLTFCNEMLRFFPLTQVQLSSPGNSRHQLGRMLAVDSSGCFIASSAYVDQLALFSLSVSG 178
           FL FCNEM RFFP+T VQLSSPGN R+QLG+MLA+DS+GCFIA+SAY D+LA+FS+S++ 
Sbjct: 117 FLRFCNEMHRFFPVTHVQLSSPGNLRNQLGQMLAIDSNGCFIATSAYEDRLAMFSISMAT 176

Query: 179 GSDLIDKK--YPQ--------AKYIWY-NMEHVLYFKGFLSI------------------ 209
            SD+IDK+  YP         A+ +   ++   ++   F+S                   
Sbjct: 177 DSDIIDKRIFYPPEIEGDSGVARSVHRTSISGTIWSMCFISKDLNQPSGGYNPVLAIILN 236

Query: 210 KRGAXXXXXXXXXWNIGEHAINVISLYVEAGPIAHDIIEVPHSNGFAFLFRVGDALLMDL 269
           +RGA         W I E+A+ VIS Y EAG +AH I+EVPHS GFAFLFR+GDALLMDL
Sbjct: 237 RRGAVLTELVLLEWIIIENAVRVISQYAEAGHVAHSIVEVPHSYGFAFLFRIGDALLMDL 296

Query: 270 RDAHNPCCIYRTSLNFLPTAVEEQNFVEESCRVHDVDDDGLFNVAACALLELRDY----- 324
           RDAHNPCC+Y+TSLN LPT+VE QNF EESCRVHD D+DG+FNVAA ALLEL+DY     
Sbjct: 297 RDAHNPCCVYKTSLNILPTSVE-QNFAEESCRVHDGDEDGIFNVAASALLELKDYVAKGD 355

Query: 325 DPMCIDSEGSNIKSTSNYMCSWSWGPESDKNPRMIFCIDTGEFFMIEISFDSEGLKVNLS 384
           DPM +D +   +KSTS ++C+ SW P ++KN RMIFC+DTGE FMIEISFDS+G KVNLS
Sbjct: 356 DPMNVDGDSGMVKSTSKHVCALSWEPGNEKNSRMIFCVDTGELFMIEISFDSDGPKVNLS 415

Query: 385 DCLYKGQPCKSLLWVESGFLAAIVEMGDGIVLKVEDGRLLYTSPIQNIAPILDMLVVDCH 444
           DCLY+G  CK+LLW   GFLAA+VEMGDG+VLK+E GRL+Y SPIQNIAPILDM VVDCH
Sbjct: 416 DCLYRGLSCKALLWFAGGFLAALVEMGDGMVLKLEQGRLVYRSPIQNIAPILDMSVVDCH 475

Query: 445 DEKRDQMFACCGVAPEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLV 504
           DE+ DQMFACCGV PEGSLRIIR+GISVEKL++TA IYQGITGTWT++MK+ D YHSFLV
Sbjct: 476 DEEHDQMFACCGVTPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKVIDSYHSFLV 535

Query: 505 ISFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAH 564
           +SFVEETRVLSVG+SFTDVTDSVGFQPDV TLACG+V DGLLVQIH+  V+LCLPT +AH
Sbjct: 536 LSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVDDGLLVQIHKNGVKLCLPTTVAH 595

Query: 565 AEGIPLSSPVCTSWFPDNTSISLGAVGHDLIVVSTSNPCFLYILGIRLLSTYHYEIYELQ 624
            EGIPL+SP+CTSWFP+N SISLGAVG++LIVV+TS+PCFL+ILG+R +S Y YEIYE+Q
Sbjct: 596 PEGIPLASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSVSAYQYEIYEMQ 655

Query: 625 HLRLLNELSCISIPQKHFERKRLSS-SNLVEDNSGPTLPIGMDIGITFVVGTHRPSVEVL 683
           H+RL NE+SCISIP KHF++K  +  SNLV+++S   L IG++IG  FV+GTH+PSVE+L
Sbjct: 656 HVRLQNEVSCISIPHKHFDKKPSTFLSNLVDNSSAAALLIGVNIGRIFVIGTHKPSVEIL 715

Query: 684 SFVPHEGLKVLACGTISLTNTLGTAVSGCIPQDVRLVLVDRSYVLSGLRNGMLLRFEWPP 743
           SF+P EGL++LA G ISLTNTLGTAVSGC+PQD RLVLVDR YVLSGLRNGMLLRFE P 
Sbjct: 716 SFLPDEGLRILASGAISLTNTLGTAVSGCVPQDARLVLVDRFYVLSGLRNGMLLRFELPA 775

Query: 744 ASSMSSLEFPHYGCPIDSCMVNVGGALSNMSAMSFEPQTCAVELRSKAMDELPVNLQLIS 803
           AS                              M F  +  +    +      PVNLQLI+
Sbjct: 776 AS------------------------------MVFSSELSSHSPSTNINS--PVNLQLIA 803

Query: 804 TRRIGITPVFLVPLSDSLDADMIALSDRPWLLQTAKHSLSYSSISFQPSTHATPVCSAEC 863
            RRIGITPVFLVPLSDSL+AD+IALSDRPWLLQ+A+HSLSY+SISFQPSTH TPVCS EC
Sbjct: 804 IRRIGITPVFLVPLSDSLEADIIALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMEC 863

Query: 864 PKGILFVAENSLHLVRVCY 882
           P GILFVAENSLHLV + +
Sbjct: 864 PMGILFVAENSLHLVEMVH 882


>GSVIVT01021587001 assembled CDS
          Length = 1043

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 145/303 (47%), Gaps = 34/303 (11%)

Query: 347 SWGPESDKNPRMIFCIDTGEFFMIEISFDSE---GLKVNLSDCLYKGQPCKSLLWVESGF 403
           ++G       R +     G   ++ I+ + E   GLK+ L   L +     ++ ++++ F
Sbjct: 257 AYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIEL---LGETSIASTISYLDNAF 313

Query: 404 LAAIVEMGDGIVLKVE---DGRLLYTSPIQ---NIAPILDMLVVDCHDEKRDQMFACCGV 457
           +      GD  ++K+    D +  Y   ++   N+ PI+D  VVD   + + Q+  C G 
Sbjct: 314 VYVGSSYGDSQLIKIHLQPDAKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGA 373

Query: 458 APEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEETRVLSVG 517
             +GSLRI+R GI + +  + +   QGI G W+LR   +D + +FLV+SF+ ETR+L++ 
Sbjct: 374 YKDGSLRIVRNGIGINE--QASVELQGIKGMWSLRSSTDDPHDTFLVVSFISETRILAMN 431

Query: 518 V-SFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLSSPVCT 576
           +    + T+  GF   V TL C       LVQ+  ++V+L   T          S  +  
Sbjct: 432 LEDELEETEIEGFCSQVQTLFCHDAVYDQLVQVTSSSVRLVGST----------SRELRN 481

Query: 577 SW-FPDNTSISLGAVGHDLIVVSTSNPCFLYI-LGIRLLSTYHYEIYELQHLRLLNELSC 634
            W  P   S+++       ++++T     +Y+ +G   L+       E++H +L  ++SC
Sbjct: 482 EWKAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGTLT-------EVKHAQLEYDISC 534

Query: 635 ISI 637
           + I
Sbjct: 535 LDI 537


>GSVIVT01005970001 assembled CDS
          Length = 934

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 83/134 (61%), Gaps = 4/134 (2%)

Query: 423 LLYTSPIQNIAPILDMLVVDCHDEKRDQMFACCGVAPEGSLRIIRTGISVEKLVKTASIY 482
           L+    ++++ PI+DM V +  +E+  Q+FA CG  P  S+RI+R G+++ ++    S  
Sbjct: 254 LVRIDQVESLMPIMDMKVSNLFEEETPQIFALCGRGPRSSIRILRPGLAISEM--AVSQL 311

Query: 483 QGI-TGTWTLRMKLNDLYHSFLVISFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLV 541
            G+ +  WT++  +ND + +++V+SF   T VLS+G +  +V+DS GF     +LA  L+
Sbjct: 312 PGVPSAVWTVKKNVNDEFDAYIVVSFANATLVLSIGETVEEVSDS-GFLDTTPSLAVSLI 370

Query: 542 GDGLLVQIHQTAVQ 555
           GD  L+Q+H + ++
Sbjct: 371 GDDSLMQVHPSGIR 384