Jatropha Genome Database

JcCA0149151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149151.10 - phase: 2 /pseudo/partial
         (625 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002224001 assembled CDS                                       637   0.0  
GSVIVT01002029001 assembled CDS                                       283   2e-76
GSVIVT01004520001 assembled CDS                                       131   8e-31

>GSVIVT01002224001 assembled CDS
          Length = 513

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/492 (69%), Positives = 374/492 (76%), Gaps = 30/492 (6%)

Query: 18  GNKDHEEESVGQSLEI--------VAKAAGXXXXXXXXXXXXXXXXXXXXMEEDSMSPAT 69
           G KD E+E V Q+LE+        V                         MEEDS++PAT
Sbjct: 6   GAKDSEDEPVPQALEVAKGLEKSEVVSVDEEEGEQEEEGEQVVEKTADDPMEEDSVNPAT 65

Query: 70  VFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPCSNANPPFWIP 129
           VFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIP SNANPPFWIP
Sbjct: 66  VFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIP 125

Query: 130 IHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANF-HGRITIWTQPSQGA 188
           IHIVIPERPTEC+VF+VIADSPRDSVQFIEWSP SCP   +I++   G    W  P    
Sbjct: 126 IHIVIPERPTECSVFSVIADSPRDSVQFIEWSPASCPLKFIISSHPRGVEPSWFNPVY-V 184

Query: 189 ANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLXXXXXXXXXXXXXFEEKFLSQQSQ 248
           A +V     W   +E+   + ++   +     YRWL             FEEKFLSQQ Q
Sbjct: 185 APMVVLLHFWGTLYEYCGFLIIIFINMH----YRWLSSKTSSSTSLKSPFEEKFLSQQPQ 240

Query: 249 TS---------------GSVQLHWSQWPPSQNNATPKWFSTSKGLLGAGPSGIMAADAIV 293
           TS               GS+QLHWSQWPP QN AT KWFST+KGLLGAGPSGIMAADAI+
Sbjct: 241 TSDRWPNFLCVCSVFSSGSIQLHWSQWPP-QNGATSKWFSTAKGLLGAGPSGIMAADAII 299

Query: 294 TDSGAMHVAGVPIVNPSTVVVWEVTPGPGPGFQAIAKTSTSNGVPPSLNPPTWSGFAPLA 353
           TD+GAMHVAGVPIVNPSTVVVWEVTPGPG GFQ I K+S +NGVPPSLNPP+W+GF+PLA
Sbjct: 300 TDTGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQVIPKSSATNGVPPSLNPPSWAGFSPLA 359

Query: 354 AYLFSWQEYLISEAKHGKKQTDQDFSDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSG 413
           AYLFSWQE+L SE K G+KQTDQDF+DAV LHCSPVSNFSAYVSPE AAQSAATTTWGSG
Sbjct: 360 AYLFSWQEFLASEMKQGRKQTDQDFNDAVLLHCSPVSNFSAYVSPETAAQSAATTTWGSG 419

Query: 414 VTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNP 473
           VTAVAFDPTRGGSVIAV IVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNP
Sbjct: 420 VTAVAFDPTRGGSVIAVAIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNP 479

Query: 474 TSSFGGQAPMQT 485
           TSSFGGQAP+QT
Sbjct: 480 TSSFGGQAPVQT 491


>GSVIVT01002029001 assembled CDS
          Length = 792

 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 153/190 (80%), Gaps = 26/190 (13%)

Query: 430 VVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPMQTVWVS 489
           + +  GQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAP+QTVW +
Sbjct: 11  IDVCAGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPVQTVWQT 70

Query: 490 KVDTSIHPTNDFKNHQAVAAGPTSDVRKTSDSGVEKAKSLTFDPFDLPSDVRSLARIVYS 549
           KV+ SI PT+DFK                          ++FDPFDLPSDVR+LA+I YS
Sbjct: 71  KVNKSIPPTSDFK--------------------------ISFDPFDLPSDVRTLAQISYS 104

Query: 550 AHGGEIAIAFLRGGVHIFSGPNFALVDSYQINVGSAIAAPAFSSTSCCSASVWHDASKDR 609
           AHGGEIA+AFLRGGVHIFSGPNF  VD+YQINVGSAIA PAFSSTSCCSASVWHD +KDR
Sbjct: 105 AHGGEIAVAFLRGGVHIFSGPNFTPVDNYQINVGSAIATPAFSSTSCCSASVWHDTNKDR 164

Query: 610 TILKIIRVLP 619
           T+LKIIRVLP
Sbjct: 165 TMLKIIRVLP 174


>GSVIVT01004520001 assembled CDS
          Length = 133

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 155 VQFIEWSPTSCPRALLIANFHGRITIWTQPSQGAANLVRDASCWQREHEWRQDIAVVTKW 214
           + FIEWSP SCPRALLIANFHGRITIWTQPSQG ANLVRDASCW+RE+EW QDIAVVTKW
Sbjct: 13  LTFIEWSPASCPRALLIANFHGRITIWTQPSQGPANLVRDASCWEREYEWHQDIAVVTKW 72

Query: 215 LSGVSP 220
           LSGVSP
Sbjct: 73  LSGVSP 78