Jatropha Genome Database

JcCA0148831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148831.10 + phase: 0 
         (288 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01005872001 assembled CDS                                       244   4e-65
GSVIVT01005873001 assembled CDS                                       148   2e-36
GSVIVT01003975001 assembled CDS                                       139   1e-33

>GSVIVT01005872001 assembled CDS
          Length = 158

 Score =  244 bits (622), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 128/153 (83%)

Query: 30  VNRWIRHGRNRLSHIFGKETAKKENFPVLEGHPAGQEHAQESIETYDTIKTNIKRLIKEF 89
           + RWIRHG  +++ +F K   + + FPVLEGHP  QEHA+ ++ET  TI+ N+  L KEF
Sbjct: 2   LKRWIRHGYKKVAGLFSKADTRTKRFPVLEGHPLAQEHAEAAVETQGTIQENLNALKKEF 61

Query: 90  KIYRWNPDIPNRKPFLQSYYIDLSTCGPMVLDVLQKIKAEDDSSLSYRRSCREGICGSCA 149
           +IYRWNPD PN KP LQSY++DLSTCGPMVLD LQKIKAE+DSSLSYRRSCREGICGSCA
Sbjct: 62  QIYRWNPDFPNTKPHLQSYFVDLSTCGPMVLDALQKIKAEEDSSLSYRRSCREGICGSCA 121

Query: 150 MNIDGTNTVACLKPIDADTTKPTIITPLPHMFV 182
           MNIDGTNTVACL+PIDADTTKPT ITPLPH+ +
Sbjct: 122 MNIDGTNTVACLRPIDADTTKPTTITPLPHISI 154


>GSVIVT01005873001 assembled CDS
          Length = 141

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 77/89 (86%)

Query: 198 SASCPSYWWSPEEFLGPAPLLHAYRWISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTA 257
           S SCPSYWW+PEEF GPA LLHAYRW+ DSRD+F +ER+QALTE  K LY+CRTIKNCT 
Sbjct: 51  STSCPSYWWNPEEFPGPAALLHAYRWVCDSRDDFVDERVQALTEGLKSLYRCRTIKNCTV 110

Query: 258 CCPKSLNPADAIHKMKTKHLLSQPVERLE 286
            CPKSL+PA+AIHKMKT+HL+SQPVE  E
Sbjct: 111 NCPKSLDPANAIHKMKTRHLVSQPVELFE 139


>GSVIVT01003975001 assembled CDS
          Length = 328

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 86/147 (58%), Gaps = 44/147 (29%)

Query: 118 MVLDVLQKIKAEDDSSLSYRRSCREGICGSCAMNIDGTNTVACLKPIDADTTKPTIITPL 177
           MVLD L KIK E D +L++RRSCREGICGSCAMNIDG N +ACL  I +  +  + +TPL
Sbjct: 1   MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGES--STVTPL 58

Query: 178 PHMFVIKDLVVDLTNFYNQY---------------------------------------- 197
           PHMFVIKDLVVD+TNFYNQY                                        
Sbjct: 59  PHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPPPTPGKEIPQSKKDRAKLDGMYECILCA 118

Query: 198 --SASCPSYWWSPEEFLGPAPLLHAYR 222
             S SCPSYWW+PE +LGPA LLHA R
Sbjct: 119 CCSTSCPSYWWNPESYLGPAALLHANR 145



 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 223 WISDSRDEFTEERLQALTEDTKKLYKCRTIKNCTACCPKSLNPADAIHKMKTKHL 277
           WISDSRDE+T+ERL A+  D  KLY+C TI NC   CPK LNP   I  +K +H+
Sbjct: 271 WISDSRDEYTKERLDAVC-DEFKLYRCHTILNCARACPKGLNPGKQIATIKQRHI 324