Jatropha Genome Database

JcCA0148631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.20 - phase: 2 /partial
         (109 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007750001 assembled CDS                                        79   6e-16

>GSVIVT01007750001 assembled CDS
          Length = 523

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 1   EIENEDELKTGPYSARTNEQXXXXXXXXXXXXXXXXXXXXXXXRRPKPSVQKEQLADDQP 60
           EIE EDE +T  Y+A +NEQ                       R+PK S+Q+E L +DQ 
Sbjct: 422 EIETEDEPRTASYTA-SNEQPIQRTWVPPQPPPIAMPEAAAAIRQPKSSIQRESLVNDQS 480

Query: 61  VSHSTDATDELQRITKISESGGAVEINGGESEVNSSEIKEDQE 103
           VS  +D  DELQRITKISESGG VEI    S +NSSE++++QE
Sbjct: 481 VSRPSDEIDELQRITKISESGGVVEIKEESSGLNSSEMQQEQE 523