Jatropha Genome Database

JcCA0148631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148631.10 - phase: 0 /partial
         (241 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007752001 assembled CDS                                       399   e-112

>GSVIVT01007752001 assembled CDS
          Length = 471

 Score =  399 bits (1024), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 215/245 (87%), Gaps = 4/245 (1%)

Query: 1   MALNLLSPAEIKAISFLDSTKSNQLPKLPGSFSLKRKD----LGRKVQCSXXXXXXXXXX 56
           MALNLL PAEIK ISFLDSTKS +LPKLPG F LKRKD     GR+V CS          
Sbjct: 1   MALNLLPPAEIKLISFLDSTKSTRLPKLPGGFVLKRKDYGATFGRRVNCSAQPPPPAWPG 60

Query: 57  XXXXXXGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPNKFKVVALAAGSNVTLLADQVK 116
                 GRKTWDGPKP+S+VGSTGSIGTQTLDIVAENP+KF++VALAAGSNVTLLADQVK
Sbjct: 61  RAVPELGRKTWDGPKPLSVVGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVK 120

Query: 117 TFKPQLVAVRNESLVDELKEALADVEEKPEIIPGEQGIVEVARHPDAVSVVTGIVGCAGL 176
           TFKPQLVAVRNE+LV+ELKEALAD E KPEIIPGEQG++EVARHP+AV+VVTGIVGCAGL
Sbjct: 121 TFKPQLVAVRNEALVNELKEALADCEHKPEIIPGEQGVIEVARHPEAVTVVTGIVGCAGL 180

Query: 177 KPTVAAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGA 236
           KPTVAAIEAGKDI LANKETLIAGGPFVLPLAHK+NVKILPADSEHSAIFQCIQGLPEGA
Sbjct: 181 KPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCIQGLPEGA 240

Query: 237 LRRII 241
           LRRI+
Sbjct: 241 LRRIL 245