Jatropha Genome Database

JcCA0148271.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148271.30 + phase: 0 
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020809001 assembled CDS                                       120   2e-28

>GSVIVT01020809001 assembled CDS
          Length = 548

 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 76/88 (86%), Gaps = 6/88 (6%)

Query: 47  LEVVAKGMLSQRKFMQKRRKVEVFKDAADEADQKNWRGVMKQIEETGSAVAVLKSKRITQ 106
           LEVV+  ML+ RKFMQ+R+K+EVF+DAADEA+Q+ WR +MK+IEE GSAV+VL     T+
Sbjct: 45  LEVVS--MLAPRKFMQRRKKIEVFRDAADEAEQRKWRRMMKEIEEVGSAVSVLS----TK 98

Query: 107 NQDLPKDLVLGTLVRFQQLKKWNLVSEV 134
           NQ LP+DLVLGTLVRF+QLKKW+LVSE+
Sbjct: 99  NQALPRDLVLGTLVRFKQLKKWSLVSEI 126