Jatropha Genome Database

JcCA0148271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0148271.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037538001 assembled CDS                                       111   2e-25
GSVIVT01033612001 assembled CDS                                        88   2e-18
GSVIVT01010807001 assembled CDS                                        66   8e-12
GSVIVT01015058001 assembled CDS                                        60   4e-10
GSVIVT01015060001 assembled CDS                                        58   2e-09
GSVIVT01015059001 assembled CDS                                        53   8e-08

>GSVIVT01037538001 assembled CDS
          Length = 328

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 23/120 (19%)

Query: 45  SMFFAVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIGKTLLKLPLSFKQLHSL 104
           S  FA+LPG+PDN+R N KGEFWVA+H ++ ++  L                       L
Sbjct: 232 SEVFAILPGYPDNVRTNEKGEFWVAIHCRRTMYQYL-----------------------L 268

Query: 105 LVGGKPHATAIKLSEDGKILEVLEDCEGKKLRFISEVEEKDGKLLIGSVLMPFLGVYNLQ 164
            +GG+ HA  +K S +GK++++LED EGK +R +SEVEE++GKL +GSVLMPF+ VY L+
Sbjct: 269 HIGGRLHAVVVKYSPEGKLVKILEDSEGKVVRAVSEVEEREGKLWMGSVLMPFVAVYQLE 328


>GSVIVT01033612001 assembled CDS
          Length = 365

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 63/116 (54%), Gaps = 25/116 (21%)

Query: 48  FAVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIGKTLLKLPLSFKQLHSLLVG 107
           F +LPGFPDNI+RNSKGEFWV +H++KG   +  LS  WIG+TLLKLP            
Sbjct: 261 FTLLPGFPDNIKRNSKGEFWVGMHSRKGKLVEWFLSYPWIGRTLLKLPF----------- 309

Query: 108 GKPHATAIKLSEDGKILEVLEDCEGKKLRFISEVEEKDGKLLIGSVLMPFLGVYNL 163
             PH      S            + +K   ISEV E+DG L IGSV  P +G Y +
Sbjct: 310 --PHGFLSFFS------------KWRKTGSISEVYERDGSLWIGSVTTPCVGKYEI 351


>GSVIVT01010807001 assembled CDS
          Length = 365

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 49  AVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIGKTLLKLPLSFKQLHSLLVGG 108
           A LPGFPDN+R N +G+FWVA+   +    +++  N W+     +LP+    L + L+G 
Sbjct: 236 ANLPGFPDNVRLNERGQFWVAIDCCRTPAQEVLTHNPWLKNIYFRLPVKLSML-ARLMGM 294

Query: 109 KPHATAIKLSEDGKILEVLEDCEGKKLRFISEV 141
           K +      +E G+ILEVLED +G  +R    +
Sbjct: 295 KMYTVISLFNEKGEILEVLEDRKGLVMRLAYSI 327


>GSVIVT01015058001 assembled CDS
          Length = 382

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 47  FFAVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIGKTLLKLPLSFKQLHSLLV 106
           F   LPG PDN+     G FW+AL        + V ++    K L  L  +F +L  L+ 
Sbjct: 267 FIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTS----KALKHLLATFPKLFQLVK 322

Query: 107 GGKPHATAIKLSEDGKILEVLEDCEGKKLRFISEVEEKDGKLLIGSVLMPFLGVYNLQ 164
           G    A+ +K++ DGKI++  +D  GK + F++   E +  L +GS+   F+G+  L+
Sbjct: 323 GSHKKASVVKVAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPLK 380


>GSVIVT01015060001 assembled CDS
          Length = 368

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 46  MFFAVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIGKTLLKLPLSFKQLHSLL 105
            F   LP  PDNI     G FW+AL        + V ++    K L     +F +L  L+
Sbjct: 252 TFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHAS----KALKHFLATFPKLFQLV 307

Query: 106 VGGKPHATAIKLSEDGKILEVLEDCEGKKLRFISEVEEKDGKLLIGSVLMPFLG 159
            G    AT +K++ DGKI++  +D  GK + F++   E +  L +GS+   F+G
Sbjct: 308 NGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIG 361


>GSVIVT01015059001 assembled CDS
          Length = 461

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 14/119 (11%)

Query: 46  MFFAVLPGFPDNIRRNSKGEFWVALHAKKGLFAKLVLSNSWIG-----KTLLKLPLSFKQ 100
           +F   LPG PDNI     G FW+AL         L LS   +G     K    L  +F +
Sbjct: 345 VFVDNLPGGPDNINLAPDGSFWIAL---------LELSREGMGFVHTSKASKHLVATFPK 395

Query: 101 LHSLLVGGKPHATAIKLSEDGKILEVLEDCEGKKLRFISEVEEKDGKLLIGSVLMPFLG 159
           L  L+ G +  A  +K+  DGK+++   D  G  + F++   E +  L +GS+   F+G
Sbjct: 396 LLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIG 454