Jatropha Genome Database

JcCA0147671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.20 + phase: 0 
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029337001 assembled CDS                                       300   3e-82
GSVIVT01026227001 assembled CDS                                       298   2e-81

>GSVIVT01029337001 assembled CDS
          Length = 336

 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 150/205 (73%), Positives = 159/205 (77%), Gaps = 4/205 (1%)

Query: 1   MARQAVAKLLGXXXXXXXXXXXXXXXXXANHARQYXXXXXXXXXVFVDKNTRLICQGITG 60
           MAR+A A+ L                  +   R +         VFVDKNTR+ICQGITG
Sbjct: 1   MARRAAAQQL----IDSIASKLSSATASSAQTRGFAAAAHPPPAVFVDKNTRVICQGITG 56

Query: 61  KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFX 120
           KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKAN SVIYVPPPF 
Sbjct: 57  KNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANTSVIYVPPPFA 116

Query: 121 XXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGI 180
                      LDLVVCITEGIPQHDMV+VKAALN+Q+KTRLIGPNCPGIIKPGECKIGI
Sbjct: 117 AAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNRQTKTRLIGPNCPGIIKPGECKIGI 176

Query: 181 MPGYIHKPGRIGIVSRSGTLTYEAV 205
           MPGYIHKPGR+GIVSRSGTLTYEAV
Sbjct: 177 MPGYIHKPGRVGIVSRSGTLTYEAV 201


>GSVIVT01026227001 assembled CDS
          Length = 329

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 148/161 (91%)

Query: 45  VFVDKNTRLICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKA 104
           VFVDKNTR+ICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG EHLGLP+FNTVAEAKA
Sbjct: 35  VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGMEHLGLPIFNTVAEAKA 94

Query: 105 ETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNKQSKTRLIG 164
           ET+ANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIG
Sbjct: 95  ETRANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMVKVKAALNRQSKTRLIG 154

Query: 165 PNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 205
           PNCPGIIKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAV
Sbjct: 155 PNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAV 195