Jatropha Genome Database

JcCA0147671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147671.10 + phase: 2 /partial
         (75 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029339001 assembled CDS                                        83   2e-17
GSVIVT01015322001 assembled CDS                                        53   3e-08

>GSVIVT01029339001 assembled CDS
          Length = 554

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1   YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP 37
           YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP
Sbjct: 513 YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP 549


>GSVIVT01015322001 assembled CDS
          Length = 778

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 1   YDRARGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKP 37
           +DR R  EIG K  KL + EE FTT +W+VRIYK+KP
Sbjct: 708 FDRVRRTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKP 744