Jatropha Genome Database

JcCA0147561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147561.20 - phase: 0 
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001144001 assembled CDS                                       337   2e-93

>GSVIVT01001144001 assembled CDS
          Length = 202

 Score =  337 bits (864), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 186/205 (90%), Gaps = 5/205 (2%)

Query: 1   MALNPQLFQNGLPVPFTNEIFVLSRDGVEFEIDKIPGSHGGHVKAKGVIYLSNVRLVFVA 60
           MALNPQLF NG+PVPF NEI VL+RDGVEFE+DKIPG+HGG+ KAKG IYLSN+R+VFVA
Sbjct: 1   MALNPQLFPNGMPVPFMNEISVLARDGVEFEVDKIPGAHGGNFKAKGTIYLSNIRMVFVA 60

Query: 61  HKPVGAFTAFDMPLLYIHGEKFNQPIFFCNNISGLVEPVVPENENGALYSTHSFKILFKE 120
           +KPVG  TAFDMPLLY+HGEKFNQPIFFCNN+SGLVEPVVPEN++ ALYSTHSFKILFKE
Sbjct: 61  NKPVGNITAFDMPLLYVHGEKFNQPIFFCNNVSGLVEPVVPENQHRALYSTHSFKILFKE 120

Query: 121 GGCGTFIPIFFNLISSVRQNNQPTPGMGP--QMDPLRAAQTPVDEMMRHAYVDPNDPTRI 178
           GGCGTF+P+FFNLI+SVR+ N+   G GP  Q+DPL+AAQTPVDEMMRHAYVDPNDPTRI
Sbjct: 121 GGCGTFVPLFFNLITSVRRYNE-LAGSGPELQVDPLQAAQTPVDEMMRHAYVDPNDPTRI 179

Query: 179 FLQQPTPESELRRRTYQLSPVERSM 203
           FLQQPTPES+LRRRTY   PVE S+
Sbjct: 180 FLQQPTPESQLRRRTYH--PVEDSI 202