Jatropha Genome Database

JcCA0147251.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.30 - phase: 0 /TE/partial
         (84 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013978001 assembled CDS                                       154   8e-39
GSVIVT01024023001 assembled CDS                                       100   2e-22
GSVIVT01016852001 assembled CDS                                        60   1e-10
GSVIVT01015200001 assembled CDS                                        52   5e-08

>GSVIVT01013978001 assembled CDS
          Length = 344

 Score =  154 bits (389), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/84 (88%), Positives = 77/84 (91%), Gaps = 1/84 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ
Sbjct: 262 LMVWDL-SRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 320

Query: 61  IWQMEENIYHDEDDMPGDESTKGS 84
           IWQM ENIYHDEDD+PG+ESTK S
Sbjct: 321 IWQMAENIYHDEDDLPGEESTKAS 344


>GSVIVT01024023001 assembled CDS
          Length = 401

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 1   LLTWSFFCRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQ 60
           L+ W    RI EEQ   DA DGPPELLF HGGH +KISDFSWN  E WVI+SVAEDN LQ
Sbjct: 321 LMVWDL-NRIGEEQLEGDAADGPPELLFSHGGHKAKISDFSWNKNEPWVISSVAEDNTLQ 379

Query: 61  IWQMEENIYHDED 73
           IW+M E IY DED
Sbjct: 380 IWKMTEGIYRDED 392


>GSVIVT01016852001 assembled CDS
          Length = 453

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)

Query: 9   RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQI 61
           +ID++Q P    + PP L F H GH  K+ DF WN  + W I SV++D         LQI
Sbjct: 368 KIDKKQAP----NAPPGLFFRHAGHRDKVVDFHWNASDPWTIVSVSDDGESTGGGGTLQI 423

Query: 62  WQMEENIYHDEDDM 75
           W+M + IY +ED++
Sbjct: 424 WRMIDLIYRNEDEV 437


>GSVIVT01015200001 assembled CDS
          Length = 469

 Score = 52.0 bits (123), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 14  QTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAED-------NILQIWQMEE 66
           +TP  A      L F H GH  K+ DF WN  + W + SV++D         LQIW+M +
Sbjct: 387 RTPTSASG----LFFKHAGHRDKVVDFHWNASDPWTVVSVSDDCDVSGGGGTLQIWRMSD 442

Query: 67  NIYHDEDDM 75
            IY DED +
Sbjct: 443 MIYRDEDAV 451