Jatropha Genome Database

JcCA0147251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147251.20 + phase: 0 
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018401001 assembled CDS                                       191   1e-49

>GSVIVT01018401001 assembled CDS
          Length = 156

 Score =  191 bits (486), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/134 (67%), Positives = 107/134 (79%)

Query: 44  NHSLPYLSLAKPSWVVKTESNVRKEIRKKPNPPCVVCKGSGRVDCHYCSGKGRTNLVHLP 103
           ++SLP+LS++KPSWVV+TESNVRK  R+ P+ PC VCKGSGRVDCH+C G+GRTN V L 
Sbjct: 22  SNSLPHLSISKPSWVVRTESNVRKTQRRMPDSPCEVCKGSGRVDCHHCQGRGRTNCVQLI 81

Query: 104 MLPKGEWPKWCRTCGGSGLSYCSRCLGTGEYRYIMGFHFMKMDSDDTQALQEHQSRYIKG 163
           MLPKGEWPKWCRTCGGSGLSYCSRCLGTGEYR IMGFHFMK  +D +Q  +  Q R    
Sbjct: 82  MLPKGEWPKWCRTCGGSGLSYCSRCLGTGEYRDIMGFHFMKRGTDQSQDHKNSQVRDNPR 141

Query: 164 HLTAADQLLNGDQF 177
             + AD L+N +Q+
Sbjct: 142 PHSTADLLINEEQW 155