Jatropha Genome Database

JcCA0147181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147181.10 + phase: 0 
         (408 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027598001 assembled CDS                                       144   1e-34
GSVIVT01019863001 assembled CDS                                        77   1e-14

>GSVIVT01027598001 assembled CDS
          Length = 507

 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 172/392 (43%), Gaps = 82/392 (20%)

Query: 15  KKRMLKDFLVDDLHTCSSTGFKSIPTKPADSSIQTVFQ--------NDLSTGKLFRSRST 66
           + RMLKDFL+DD ++CSS GFKS P K +  +++ + +        N  +     RSRST
Sbjct: 60  RPRMLKDFLIDDSNSCSSNGFKSFPRKASHCTVRNLLECDGGERGSNSNNKSTFLRSRST 119

Query: 67  TMFAFHSVINALKNFQFTSVKAPSIFPXXXXXXXXXXXXXXXXDTERASESKLESEVKIT 126
                 S           +VK+PS                      R + ++        
Sbjct: 120 AAATTISAFQKASEIVINAVKSPSFLQRSLKRRFW-----------RRNSTEERGMTVTV 168

Query: 127 VTIKDIIRWKSFRDLMEEKSPPLDLAXXXXXXXXXXXXXXXXXXXXXNGSSWCDSDFTSE 186
           + +KDI+R +SFRD+MEEKS P D                         SSWC SDFT++
Sbjct: 169 IRVKDIVRMRSFRDVMEEKSAPSDSTGSITTTATTSSNG----------SSWCGSDFTAD 218

Query: 187 YLPFWNGNSEEYGENEAMEVGKKDLPCVGEA-------TIEAEKIVGPKA----EEKQLS 235
           Y+  W+GNSEEY    A++VG+K LP VG+        T  +   VGPK     EEK+  
Sbjct: 219 YVQSWSGNSEEYSGANAVKVGEKYLPGVGDGNANTTTRTTMSIDAVGPKGELRCEEKEQH 278

Query: 236 SPISVIDIEFEGDEDSSS--IYDESNANVESKYPFNLEKWMAVXXXXXXXXXXXXXXXXX 293
           SP+SV+D  F  D +  S  I DE     E K                            
Sbjct: 279 SPVSVLDCPFTEDAEPFSFFIRDEEEEEAEEK---------------------------- 310

Query: 294 XXXXAWQLLNYFKQTSSMK------EERLVFDFFREELCRKTYETKNEGFECEMLISRVK 347
               A QLL+  K   S++       + L+ +FFR+EL + +   +    E +  I ++ 
Sbjct: 311 ----AMQLLDQVKAAGSVEFSKANLNDDLLLEFFRDELMKISRGNQTVDKEVDAEILKIA 366

Query: 348 E-WINGEDRMWVGGENKEACIREMERQGKWSK 378
           E W+ GE    V  E KEACIR+MER G+W K
Sbjct: 367 EAWLKGEFEWGVETE-KEACIRDMERGGRWRK 397


>GSVIVT01019863001 assembled CDS
          Length = 273

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 96/213 (45%), Gaps = 30/213 (14%)

Query: 18  MLKDFLVDDLHTCSSTGFKSIPTKPADSSIQTVFQNDL------STGKLFR------SRS 65
           MLKDFL+DD+ +CSS GFKS P +   ++++ + + D          +L R      + S
Sbjct: 20  MLKDFLLDDMSSCSSNGFKSFPRRHCCTTVRYLVEKDFKAKDSTKAKRLLRKSRSKAAAS 79

Query: 66  TTMFAFH----SVINALKNFQFTSVKAPSIFPXXXXXXXXXXXXXXXXDTERA--SESKL 119
           TT+ A      +VINA+K   F+SVKAPS                     +R     + +
Sbjct: 80  TTISALQRASEAVINAVKLLPFSSVKAPSFSVKNRSRKGILPRSLSRKLLKRKFWKRTAV 139

Query: 120 ESEVKITVTIKDIIRWKSFRDLMEEKSPPLDLAXXXXXXXXXXXXXXXXXXXXXNGSSWC 179
           E E++I        RWKSF D +EEK      +                     N +SW 
Sbjct: 140 EEEIEIE-------RWKSFHDFLEEKQK----SSSHIRHHSTTTTTIDSTSATSNSNSWS 188

Query: 180 DSDFTSEYLPFWNGNSEEYGENEAMEVGKKDLP 212
           D +FT +YL F + NS   GEN+A+   KK LP
Sbjct: 189 DGEFTLDYLQFSSCNSVSSGENDAVS-RKKYLP 220