Jatropha Genome Database

JcCA0147111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147111.10 - phase: 0 /partial
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024770001 assembled CDS                                       282   7e-77
GSVIVT01032851001 assembled CDS                                       264   2e-71

>GSVIVT01024770001 assembled CDS
          Length = 589

 Score =  282 bits (722), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 129/169 (76%), Positives = 144/169 (85%)

Query: 34  SLKCISHSNPSLVDDEAKFVEAAKHGNIVPLRSCIFSDQLTPVTAYRCLVKEDDREAPSF 93
           ++ C+SHS+PSLVD  AKF EAAK GN++PL   IFSD LTPV AYRCLVKEDDR+APSF
Sbjct: 67  AVACLSHSSPSLVDHSAKFFEAAKKGNLIPLHRSIFSDHLTPVLAYRCLVKEDDRDAPSF 126

Query: 94  LFETVEPGFQVSRVGRYSVVGAQPAIEIVAKENKVTIIDHEAGCLTEEFVEDPMTIPRRI 153
           L+E+VEPG Q S VGRYSV+GAQP IEIVAKEN VTI+DHEAG  TEE VEDPM+IPRR+
Sbjct: 127 LYESVEPGIQSSNVGRYSVIGAQPTIEIVAKENMVTIMDHEAGSRTEEIVEDPMSIPRRM 186

Query: 154 SESWKPQIISELSEAFCGGWVGYFSYDTVRYVEKKKLPFSGAPDDDRNL 202
            E WKPQ++ EL EAFCGGWVGYFSYDTVRYVEKKKLPF  AP DDRNL
Sbjct: 187 MEGWKPQLLDELPEAFCGGWVGYFSYDTVRYVEKKKLPFLSAPKDDRNL 235


>GSVIVT01032851001 assembled CDS
          Length = 590

 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/203 (66%), Positives = 157/203 (77%), Gaps = 5/203 (2%)

Query: 2   QSLTFSLRLSPVPSTTAISTRRRLPTSFSCVRSLKCISHSNPSL-VDDE-AKFVEAAKHG 59
           +S+ FS R+S V     +STR  +  S  C R+ KC+S + PSL +DD   KF EA+++G
Sbjct: 9   RSMPFSDRISHVL-LAGVSTRSSV--SVPCQRAFKCLSLAAPSLGIDDNPVKFKEASRNG 65

Query: 60  NIVPLRSCIFSDQLTPVTAYRCLVKEDDREAPSFLFETVEPGFQVSRVGRYSVVGAQPAI 119
           NIVPL +CIFSDQLTP+ AYRCLVKE D EAPSF+FE+V PG Q S VGRYSVVGAQP +
Sbjct: 66  NIVPLHACIFSDQLTPILAYRCLVKEGDLEAPSFVFESVVPGSQDSSVGRYSVVGAQPCM 125

Query: 120 EIVAKENKVTIIDHEAGCLTEEFVEDPMTIPRRISESWKPQIISELSEAFCGGWVGYFSY 179
           EIVAKENKV  +DHE G  TEE VEDPM IPRRI+E WKPQ++ EL + FCGGWVG+FSY
Sbjct: 126 EIVAKENKVITMDHEEGLRTEELVEDPMVIPRRIAEGWKPQLLDELPDTFCGGWVGFFSY 185

Query: 180 DTVRYVEKKKLPFSGAPDDDRNL 202
           DTV YVEKKKLPFS A DDDRNL
Sbjct: 186 DTVCYVEKKKLPFSKAQDDDRNL 208