Jatropha Genome Database

JcCA0147051.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147051.20 + phase: 0 /pseudo
         (273 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031808001 assembled CDS                                       234   4e-62

>GSVIVT01031808001 assembled CDS
          Length = 398

 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 133/281 (47%), Positives = 177/281 (62%), Gaps = 31/281 (11%)

Query: 1   MSTSVFNSVYLDGGCLCKGQVKFSTLRKRNEHRQCVVRSAALSTRSLQIRNSKQEKEARV 60
           MS++  +S+  D     K + K S  RK   H +  V S+  S +  + +  K  K  R+
Sbjct: 1   MSSAHLSSIRFDREWFRKSETKSSNGRKL--HIRGSVTSSPQSVQFAEAKAEKSGKAVRI 58

Query: 61  ALLGASGYTGAEIIRLLANHPFFEISVMTADKNAGKSIESVFPHFISKKDLPVLVSTNDA 120
            +LGASGYTG+EI+RLLANHP F I++MTAD+ AG+SI SVFPH I+ +DLP +V+  DA
Sbjct: 59  GVLGASGYTGSEIVRLLANHPHFGITLMTADRKAGQSIGSVFPHLIT-QDLPDMVAIKDA 117

Query: 121 SFSDVDAVFCCLPHGTTQEIIKGLPRKLKIVDLSAVWFETTIKTDFRLRDISEYEEWYGQ 180
            FS+VDAVFCCLPHGTTQ+IIK LP+ LKIVDLSA         DFRL++I+EYEEWYGQ
Sbjct: 118 KFSNVDAVFCCLPHGTTQDIIKALPKSLKIVDLSA---------DFRLQEIAEYEEWYGQ 168

Query: 181 SHRAPDLQEEAIYGLTEIFQKGNKICTASC*SWLLSNINSTPS-----------CSFTKG 229
            HRAPDLQ+EA+YGLTEI ++  K       + L++N    P+            +  + 
Sbjct: 169 PHRAPDLQKEAVYGLTEILREEIKA------ARLVANPGCYPTTIQLPLVPLLKANLIET 222

Query: 230 *SHCI*KYHH*RKVWR--EWSSLYTELTEGIMSYGVTRHRH 268
            +  I          R  + ++LYTE+ EGI SYG+TRHRH
Sbjct: 223 RNLIIDAKSGVSGAGRGAKEANLYTEIAEGIHSYGITRHRH 263