Jatropha Genome Database

JcCA0147051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147051.10 + phase: 1 /partial
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031809001 assembled CDS                                       149   5e-37

>GSVIVT01031809001 assembled CDS
          Length = 2686

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 97/122 (79%), Gaps = 2/122 (1%)

Query: 1    LAHYRSSIGKSPYIDFDGEQQLMNKLKETEDDRVQIAQRLFGLCTSVLKVAGITKPVSNV 60
            LA YR+S G+S  IDF+ EQ L NKLKETE++R+Q+AQ+   LCTS+LKVAGITKPVS +
Sbjct: 2523 LARYRASCGRS--IDFNEEQMLSNKLKETEEERLQLAQKFLNLCTSILKVAGITKPVSEI 2580

Query: 61   TPAAAEEALEQMKSKLTSLERECQDLTIKNRITTEKNRLLEVMAQASPVNSRIDENCQTP 120
            + + AEEALEQ+K++LT+LERE QDL  KN+I  E+ RL E++ Q SP++SR DEN  TP
Sbjct: 2581 SLSVAEEALEQLKNRLTTLERESQDLKFKNKIVNERIRLSELVPQPSPLSSRTDENHLTP 2640

Query: 121  KR 122
            +R
Sbjct: 2641 QR 2642