Jatropha Genome Database

JcCA0147021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0147021.20 + phase: 0 
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024772001 assembled CDS                                       178   9e-46

>GSVIVT01024772001 assembled CDS
          Length = 509

 Score =  178 bits (452), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 113/177 (63%), Gaps = 21/177 (11%)

Query: 1   MPSIAGRNSSPCKEITEIVPSNDESATPQKRKLRSNAMAVQDSPIS--SPVKWKSPRRSL 58
           MPSI    S    E+      +   +TPQKR+      ++   PIS  SPVKWKSPRRS+
Sbjct: 1   MPSIGAVRSESSGEV-----RSGSGSTPQKRR------SISGGPISPPSPVKWKSPRRSV 49

Query: 59  PSGPNTPRNEIENAC--------KSVTKELSNDITNKSSWNPRDMEQISAVKEALHVSTA 110
              P TP  EIE           KS  K LS    +KS WNP D +Q+SA KEALHVST 
Sbjct: 50  NGSPKTPSKEIEKDSDAKATRLHKSPMKNLSEIFLDKSKWNPGDSKQMSAAKEALHVSTV 109

Query: 111 PSTVVCREDEQKRVFEFCKTCIEQEKAGSLYVCGCPGTGKSLSMEKVKQQLIDWSKE 167
           PSTVVCREDEQ R+ +FCK CIE EKAGSLY CGCPGTGKSLSMEKV++ L+DW+ +
Sbjct: 110 PSTVVCREDEQNRIMDFCKACIEHEKAGSLYACGCPGTGKSLSMEKVRRALVDWAGQ 166