Jatropha Genome Database

JcCA0146871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146871.10 + phase: 0 
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036737001 assembled CDS                                       210   2e-55

>GSVIVT01036737001 assembled CDS
          Length = 290

 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 114/122 (93%)

Query: 35  LFCADDLIVDPRNLEWMREADCPVVADVTHSLQQPAGRKLDGGGVASGGLRELIPCIART 94
           +F  +DLIVDPRNLEWMREA+CP+VADVTHSLQQPAGRKL+GGGVASGGLRELIPCIART
Sbjct: 169 MFGYNDLIVDPRNLEWMREANCPIVADVTHSLQQPAGRKLEGGGVASGGLRELIPCIART 228

Query: 95  AVAVGVDGIFMEVHDDPLTAPVDGPTQWPLRHLEGLLEELMAIARASKGKRRMDIDLTPF 154
           AVAVGVDGIFMEVH+DPL APVDGPTQWPLRHLE LLEEL+AIAR SKGK+R +IDLTP 
Sbjct: 229 AVAVGVDGIFMEVHNDPLNAPVDGPTQWPLRHLEELLEELVAIARVSKGKQRFNIDLTPV 288

Query: 155 RD 156
            D
Sbjct: 289 HD 290