Jatropha Genome Database

JcCA0146681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146681.10 + phase: 0 
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023813001 assembled CDS                                       259   8e-70
GSVIVT01034280001 assembled CDS                                       258   2e-69
GSVIVT01029866001 assembled CDS                                        91   5e-19

>GSVIVT01023813001 assembled CDS
          Length = 399

 Score =  259 bits (662), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 133/137 (97%)

Query: 91  MENVEKRPFYLYSKPQITRNVEAYRDALEGLNSIIGYAIKANNNLKVLEHLRQLGCGAVL 150
           M+ VEKRPFYLYSKPQITRN EAY++ALEGL SIIGYAIKANNNLK+LEHLR+LGCGAVL
Sbjct: 1   MDQVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVL 60

Query: 151 VSGNELRLALRAGFDPKRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVAAARIAG 210
           VSGNELRLALRAGFDP RCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL+NI++AARIAG
Sbjct: 61  VSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAG 120

Query: 211 EKVNVLLRINPDVDPQV 227
           +KVNVLLRINPDVDPQV
Sbjct: 121 KKVNVLLRINPDVDPQV 137


>GSVIVT01034280001 assembled CDS
          Length = 399

 Score =  258 bits (658), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/137 (90%), Positives = 131/137 (95%)

Query: 91  MENVEKRPFYLYSKPQITRNVEAYRDALEGLNSIIGYAIKANNNLKVLEHLRQLGCGAVL 150
           M  VEKRPFYLYSKPQI RN EAYR+ALEGL SIIGYAIKANNNLK+LEHLR+LGCGAVL
Sbjct: 1   MNQVEKRPFYLYSKPQIARNFEAYREALEGLRSIIGYAIKANNNLKILEHLRELGCGAVL 60

Query: 151 VSGNELRLALRAGFDPKRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVAAARIAG 210
           VSGNELRLALRAGFDP RCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL+NI++AARIAG
Sbjct: 61  VSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAG 120

Query: 211 EKVNVLLRINPDVDPQV 227
           +KVNVLLRINPDVDPQV
Sbjct: 121 KKVNVLLRINPDVDPQV 137


>GSVIVT01029866001 assembled CDS
          Length = 264

 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 51/57 (89%), Gaps = 3/57 (5%)

Query: 174 NGK---LLEDLVLAAQEGVFVNVDSEFDLENIVAAARIAGEKVNVLLRINPDVDPQV 227
           NG+    LEDLVLAA +GVFVNVDSEFDL+NI++ ARIAG+KVNVLLRINPDVDPQV
Sbjct: 28  NGRRAFFLEDLVLAAPKGVFVNVDSEFDLDNIISTARIAGKKVNVLLRINPDVDPQV 84