Jatropha Genome Database

JcCA0146411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146411.20 - phase: 0 
         (618 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025324001 assembled CDS                                       343   1e-94
GSVIVT01037473001 assembled CDS                                       285   3e-77
GSVIVT01027355001 assembled CDS                                       117   1e-26

>GSVIVT01025324001 assembled CDS
          Length = 589

 Score =  343 bits (881), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/300 (60%), Positives = 228/300 (76%), Gaps = 17/300 (5%)

Query: 3   FDEMG--FCSDMDFFSAPFGEDVAAPQAEPEPTVEDDYSDEETDVDELERRMWRDKMRLK 60
           F+E+G   CSD++             +   E   E D SDEE + +ELERRMW+D+++LK
Sbjct: 4   FEEIGVDMCSDIEV-----------DEVRCENIAEKDVSDEEIEAEELERRMWKDRIKLK 52

Query: 61  RLKEQNK--SKEGIDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIP 118
           R+KE+ K  +++  +  K + + + ARRKKMSRAQDGILKYMLK+MEVCKA+GFVYGIIP
Sbjct: 53  RIKERQKITAQQAAEKQKPKPNADHARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIP 112

Query: 119 EKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSIPGKNEDCNSIGPTPHTLQEL 178
           EKGKPV+GASDN+R WWK+KV+FD+NGPAAIAKY+A+     +NE+ N  G +  TLQ+L
Sbjct: 113 EKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMVENEN-NRNGNSQSTLQDL 171

Query: 179 QDTTLGSLLSALMQHCDPPQRRFPLEKGVXXXXXXXXXXXXXXQLGLPKDQGPPPYKKPH 238
           QD TLGSLLS+LMQHCDPPQR++PLEKGV              +LGL + Q  PPYKKPH
Sbjct: 172 QDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLARSQS-PPYKKPH 230

Query: 239 DLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE 298
           DLKK WKVGVLTAVIKHMSPDI+KIR+LVRQSKCLQDKMTAKES+ WL ++N+EE+L R+
Sbjct: 231 DLKKMWKVGVLTAVIKHMSPDISKIRRLVRQSKCLQDKMTAKESSIWLGVLNREESLIRQ 290


>GSVIVT01037473001 assembled CDS
          Length = 341

 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/283 (55%), Positives = 182/283 (64%), Gaps = 32/283 (11%)

Query: 101 LKMMEVCKAQGFVYGIIPEKGKPV--------TGASDNLREWWKDKVRF--------DRN 144
           L+ M V   +G +    PE+  PV            +  R  W+DK+R         D+N
Sbjct: 13  LEFMSVPFMEGDMAASQPEQVAPVDDEYTDEEMDVDELQRRMWRDKLRLKRLKEQKEDQN 72

Query: 145 GPAAIAKYQADNSI---------------PGKNEDCNSIGPTPHTLQELQDTTLGSLLSA 189
           G   + + Q+                     K E CNS+GPT HTL ELQDTTLGSLLSA
Sbjct: 73  GADTVKQRQSQEQARRKKMALYMVLFQRRERKQEGCNSVGPTSHTLHELQDTTLGSLLSA 132

Query: 190 LMQHCDPPQRRFPLEKGVXXXXXXXXXXXXXXQLGLPKDQGPPPYKKPHDLKKAWKVGVL 249
           LMQHC+PPQRRFPLEKG+              QLG PKDQGPPPYKKPHDLKKAWKV VL
Sbjct: 133 LMQHCEPPQRRFPLEKGIPPPWWPTGNEEWWPQLGSPKDQGPPPYKKPHDLKKAWKVSVL 192

Query: 250 TAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDSCPPLXX 309
           TAV+KHMSPDI+KIRKLVRQSKCLQDKMTAKESATWLAIINQEEALAR+LYPD  PPL  
Sbjct: 193 TAVMKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDYRPPLSS 252

Query: 310 XXXXXXLVIHDCSEYDVEGVENEPNFDVQECKPENLN-SNLGM 351
                   I DC EYDVEGV++E +F++QECKP++ N SNL +
Sbjct: 253 ASGSGSFSIKDCGEYDVEGVQDELSFEIQECKPDSSNFSNLNL 295



 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 1/91 (1%)

Query: 1  MMFDEMGFCSDMDFFSAPFGE-DVAAPQAEPEPTVEDDYSDEETDVDELERRMWRDKMRL 59
          MMFDEMG C +++F S PF E D+AA Q E    V+D+Y+DEE DVDEL+RRMWRDK+RL
Sbjct: 2  MMFDEMGICGNLEFMSVPFMEGDMAASQPEQVAPVDDEYTDEEMDVDELQRRMWRDKLRL 61

Query: 60 KRLKEQNKSKEGIDIAKQRQSQEQARRKKMS 90
          KRLKEQ + + G D  KQRQSQEQARRKKM+
Sbjct: 62 KRLKEQKEDQNGADTVKQRQSQEQARRKKMA 92


>GSVIVT01027355001 assembled CDS
          Length = 148

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 81/125 (64%), Gaps = 12/125 (9%)

Query: 371 IVTNVDFIRKRKPPSDIDMMVDQKIYTCEFVQCPYSQLRLGFNDRASRDNHQLNCPYR-- 428
              N+DF+    PP +  +M+DQK+YTCE+ QCPY+  RL F DRASR+NHQ+NC YR  
Sbjct: 9   FCGNLDFL---SPPDEPHIMMDQKMYTCEYTQCPYNNYRLAFLDRASRNNHQMNCLYRSN 65

Query: 429 CSLDFGGSNFHCNEVKPVI----FPHPKPAPLMVNAAPPTFDLS--GVPEDGQKMISELM 482
            S  FG SNF  N  KP      F  PK A   VN + P F++S  G+PEDGQKMIS+LM
Sbjct: 66  SSQGFGMSNFQINNEKPAAFSLPFAQPKAAAPPVNQS-PAFNVSGLGLPEDGQKMISDLM 124

Query: 483 SIYDT 487
           S YDT
Sbjct: 125 SFYDT 129