Jatropha Genome Database

JcCA0146401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146401.10 - phase: 0 
         (206 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035096001 assembled CDS                                       345   7e-96
GSVIVT01028052001 assembled CDS                                       264   2e-71
GSVIVT01008460001 assembled CDS                                       220   4e-58

>GSVIVT01035096001 assembled CDS
          Length = 206

 Score =  345 bits (886), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 182/206 (88%), Positives = 186/206 (90%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLAASVLKCG+GKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180

Query: 181 LAQGPGEKAPQAPAPQQTEGAKKSKK 206
           LAQGP E+AP A APQ  EG KK+KK
Sbjct: 181 LAQGPVERAPPASAPQPAEGTKKAKK 206


>GSVIVT01028052001 assembled CDS
          Length = 175

 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 136/151 (90%)

Query: 34  MANSRQNVRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 93
           MANSRQN+RKLVKDGF+IRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI
Sbjct: 1   MANSRQNIRKLVKDGFVIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKI 60

Query: 94  XXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK 153
                         KYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK
Sbjct: 61  LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREK 120

Query: 154 TLSDQFEAKRAKNKASRERKIARREERLAQG 184
           TLSDQFEAKRAKNKASRERK ARREERLAQG
Sbjct: 121 TLSDQFEAKRAKNKASRERKFARREERLAQG 151


>GSVIVT01008460001 assembled CDS
          Length = 183

 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/163 (66%), Positives = 129/163 (79%)

Query: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60
           M S+KLQKRLAA +L CG+GKVWLDPNE++ IS+ANSR ++RKLVKDGF+I+KP+K HSR
Sbjct: 1   MASMKLQKRLAACLLHCGQGKVWLDPNEISNISLANSRTDIRKLVKDGFVIKKPSKTHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
            RARR  E K KGRHSG GKRKGTREARLP+K+              KYRE +KID+H+Y
Sbjct: 61  GRARRSLEGKAKGRHSGEGKRKGTREARLPSKVVWMRKLRVLRRLLRKYRELEKIDRHVY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR 163
           H+MYMK KGN FKNKR LME+IHK KAE+AREK +S QFE KR
Sbjct: 121 HEMYMKAKGNTFKNKRALMETIHKLKAERAREKVISHQFETKR 163