Jatropha Genome Database

JcCA0146311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146311.10 + phase: 0 /TE/pseudo/partial
         (334 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038208001 assembled CDS                                       129   2e-30
GSVIVT01029816001 assembled CDS                                       120   9e-28
GSVIVT01007613001 assembled CDS                                        61   1e-09
GSVIVT01021964001 assembled CDS                                        55   4e-08
GSVIVT01017026001 assembled CDS                                        50   1e-06

>GSVIVT01038208001 assembled CDS
          Length = 364

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 16/196 (8%)

Query: 3   ISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELWQ 62
           I   +L  DT K+IW+ A  T+S   N ++  ++   +H+ +QG+L + +YF  L+ LW+
Sbjct: 105 IGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQGNLMVTEYFNTLTRLWR 164

Query: 63  KLDYYLDFQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYS 122
           +LD +      C  D    +K +E +RV+ FL GLN   D+IR +++G  P PSLR+A+S
Sbjct: 165 QLDTFEVHNWNCVTDGFLYKKIVEGKRVFKFLLGLNKNLDEIRGRIMGVKPLPSLREAFS 224

Query: 123 FLQQEETRRSAM--------VHRSTIDKEGLIANSAREHIQAAKSSSSDRDQLFCDYCSK 174
            +++EE+R++ M        +  S+  K        R+ I+  +         +CD+C K
Sbjct: 225 EVRREESRKNLMMGSHQQLNMAESSALKTQFAPFDNRQKIKGGRP--------WCDHCRK 276

Query: 175 NRHTKEFCWKLHGPPT 190
             H++E CWK+HG P 
Sbjct: 277 PGHSRETCWKIHGKPV 292


>GSVIVT01029816001 assembled CDS
          Length = 1050

 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 83/128 (64%)

Query: 3   ISRGYLLLDTTKKIWDAASLTYSQTGNYAQRYELRQKVHETKQGDLTIAQYFAKLSELWQ 62
           I + YL L T K +WD    TYS  GN  Q +E++ K+ + KQG  ++ QY+  L   WQ
Sbjct: 650 IGQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQGSHSVTQYYNILPNAWQ 709

Query: 63  KLDYYLDFQARCTDDATQVQKXIEVERVYDFLAGLNNEYDQIRIQVLGRDPFPSLRQAYS 122
           +LD + + + +C +D     K +E ER +DFLAGLN E D++R Q+LG++P PS+R+ +S
Sbjct: 710 ELDLFSNMEWKCAEDNAHYCKILEKERAFDFLAGLNKELDEVRGQILGKEPLPSVREIFS 769

Query: 123 FLQQEETR 130
            +++E++R
Sbjct: 770 EVRREKSR 777


>GSVIVT01007613001 assembled CDS
          Length = 128

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 239 NSGNAFLTFLA----KIAKPSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVP 294
           NSG    +F      ++   SW+IDSGA  H T   + F TY       KI +A+GSLV 
Sbjct: 4   NSGTPSFSFCINASHRVYDESWIIDSGATDHMTSKSQLFNTYTPSPSNKKIVVANGSLVT 63

Query: 295 IVGTGSIDCTSNIKLSLVLHVPRLPINLL 323
           +VG G I  T  + L  VLHVP+L  NL 
Sbjct: 64  VVGFGDIYITPTLILKNVLHVPKLSANLF 92


>GSVIVT01021964001 assembled CDS
          Length = 191

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 239 NSGNAFLTFLAKIAK----PSWVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVP 294
           NSG   L+F   ++      SW+IDS A  H T   + F TY       KI +A+GSL  
Sbjct: 4   NSGTPSLSFCINVSHRVYDDSWIIDSDATNHMTSKSQLFNTYTLNPSNKKIVVANGSLAT 63

Query: 295 IVGTGSIDCTSNIKLSLVLHVPRLPINLLYVSLITKHL 332
           I G G I  T  + L  V HVP+   NL+ +  +T  L
Sbjct: 64  IAGFGDIYITPTLILKNVHHVPKFSANLVSIQKLTHDL 101


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 256 WVIDSGANKHTTGSIKHFLTYFKYQGTDKIHIADGSLVPIVGTGSIDCTSNIKLSLVLHV 315
           W +D+GA+ H T           Y G D + + +G+ +PI  TG++    NI L  VL V
Sbjct: 873 WFLDTGASAHMTTDPSILDQSKNYMGKDSVIVGNGASLPITHTGTLSSVPNIHLLDVLVV 932

Query: 316 PRLPINLLYVSLIT 329
           P L  NLL +S +T
Sbjct: 933 PHLIKNLLSISKLT 946