Jatropha Genome Database

JcCA0146281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0146281.20 + phase: 0 
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009308001 assembled CDS                                        52   7e-08

>GSVIVT01009308001 assembled CDS
          Length = 111

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 36/58 (62%), Gaps = 4/58 (6%)

Query: 14 SCDKLDRVANWVGSNVASAFFASLERCSCINLNTADLEDEDDEGAKDRPLMLCKPTIR 71
           C KLD VA W  + VA+AFFASLERCSCI + T D  D DD  A D PL+     +R
Sbjct: 34 GCGKLDGVAMWFINGVAAAFFASLERCSCIRIATED--DCDD--ANDLPLIFNDGNLR 87