Jatropha Genome Database

JcCA0145861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.20 + phase: 0 /partial
         (225 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017799001 assembled CDS                                       223   6e-59

>GSVIVT01017799001 assembled CDS
          Length = 826

 Score =  223 bits (568), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 154/221 (69%), Gaps = 3/221 (1%)

Query: 3   DVCALGCCSRFWSELCRSDCLWEFLTKERWPSVSFISDFSPCSV-PVIKGWREIYIKMHR 61
           D+C+LG CSR W EL  SD +WE L ++RW     + + S   + P  +GW+  YIK H 
Sbjct: 607 DLCSLGSCSRSWRELWGSDPIWERLCRDRWSVQCMLGESSASELHPPKEGWKSFYIKWHH 666

Query: 62  EMAGKATTVIEFVEHRSLSQSLEIGDYNKAIQDLWLMRLAFKDIQMFLFKPXXXXXXXXX 121
           EMAG+AT V+ FVE RS S+SLE+GD+ KAI  L   +L FKD+Q+FLFKP         
Sbjct: 667 EMAGRATDVVRFVESRSSSESLEVGDHLKAIVGLRDRQLGFKDVQIFLFKPKLNVLINLV 726

Query: 122 XXHYCIFCLKLPARNVMDALLSCKISEREVCVNWWKLGRWFYGFRMRDESHSRKVSLTDL 181
              YCI  LK+PA +VM+A+ SCKISER+VCV WWKLGRWFYGFR+RDESH R+VSL D+
Sbjct: 727 GLQYCIQWLKVPAEHVMEAIQSCKISERQVCVKWWKLGRWFYGFRLRDESHCRRVSLRDV 786

Query: 182 TTDKGEDVLGVLQRGAIHEVLRVEIFISNATTSPWSSQSSH 222
              K ++VL VL RGAIHEVLRV+I I + +T+ WS QSS 
Sbjct: 787 A--KEDEVLWVLHRGAIHEVLRVQISIPSPSTTSWSCQSSQ 825