Jatropha Genome Database

JcCA0145861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145861.10 - phase: 0 
         (418 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017797001 assembled CDS                                       119   3e-27
GSVIVT01023933001 assembled CDS                                        64   9e-11
GSVIVT01031907001 assembled CDS                                        64   2e-10
GSVIVT01021427001 assembled CDS                                        53   3e-07

>GSVIVT01017797001 assembled CDS
          Length = 172

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 82/134 (61%), Gaps = 25/134 (18%)

Query: 1   MSLCFSSNLFTLHSPKFYSYKTRFSTQFIDQIQVHSFSCSLSPSTPILSEPFKFNRHRLN 60
           MSL  SSN+ TLHSPK  S++   ++QFI+Q Q   F    +  TP +  P         
Sbjct: 1   MSLYLSSNVLTLHSPKTRSFRNCSASQFINQNQ--RFLPITASITPTVEPP--------- 49

Query: 61  PIXXXXXXXXXXXXXXFRRKNPKDINILVAGSTGYIGKFVVKELVNRGFNVIAIARERSG 120
                           FR KN  +IN++V GSTGYIGKFVVKELV+RGFNVIAIARERSG
Sbjct: 50  --------------SSFRGKNASEINVVVVGSTGYIGKFVVKELVSRGFNVIAIARERSG 95

Query: 121 IRGKNSKEDTLNDL 134
           IRG+N KEDTL DL
Sbjct: 96  IRGRNRKEDTLTDL 109


>GSVIVT01023933001 assembled CDS
          Length = 397

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 43/287 (14%)

Query: 83  KDINILVAGSTGYIGKFVVKELVNRGFNVIAIARERSGIRGKNSKEDTLNDLQGANVCFS 142
           +  ++LV G+TG +G+ VV+  ++ G++V      R  +R + +  D L D  GA V  +
Sbjct: 80  RSTSVLVVGATGTLGRQVVRRALDEGYDV------RCLVRPRPAPADFLRDW-GAIVVNA 132

Query: 143 DVTNLDILDKSLNDLGVSIDVVVSCLASR-SGGIKDSWKIDYEATKNSLVAGRNNGANHF 201
           D+T  + +  +L    V I  V+ C   R    IK    +D+E     +   +  G   +
Sbjct: 133 DLTKPETIPATL----VGIHTVIDCATGRPEEPIK---TVDWEGKVALIQCAKAMGIQKY 185

Query: 202 VLLSAI-C---VQKPLLEFQRAKLKFEADLMKEAEEDNGFSYSIVRPTAFFKSLGGQ--V 255
           V  S   C    + PL+E +    KF  D+        G ++ I+R   F + L GQ  V
Sbjct: 186 VFFSIHNCDNHPEVPLMEIKYCTEKFLQDI--------GLTHIIIRLCGFMQGLIGQYAV 237

Query: 256 ELVKDGKPYVMFGDGKLCACKPISESDLA--SFIADCVLSEDKIN-KVLPIGGPGKALTS 312
            ++++     ++G         +   D+A  +FIA   L  +KIN K+L   GP +A T+
Sbjct: 238 PILEEKS---VWGTDATTRIAYMDTQDIARLTFIA---LRNEKINGKLLTFAGP-RAWTT 290

Query: 313 LEQGEMLFRLLGKEPKFLKVPIGIMDFAIGILDFLANIFPSMEDAAE 359
            E   +  RL G++     VP+ ++         L  +F    D A+
Sbjct: 291 QEVITLCERLAGQDANVTTVPVSVLKLT----RQLTRLFEWTNDVAD 333


>GSVIVT01031907001 assembled CDS
          Length = 529

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 30/178 (16%)

Query: 89  VAGSTGYIGKFVVKELVNRGFNVIAIARERSGIRGKNSKEDTLN-------DLQGANVCF 141
           VAG+TG +G   V+EL+  GF V      R+G+R     E  +        D++ A+   
Sbjct: 85  VAGATGRVGSRTVRELLKLGFRV------RAGVRTAQKAEALIQSVKQMKLDVESASEGT 138

Query: 142 SDVTNLDILDKSL---NDLGVSI---DVVVSCLASRSGGIKD---SWKIDYEATKNSLVA 192
             V  L+I++  L   + +G ++    VV+ C+ +    + D    ++IDY ATKN + A
Sbjct: 139 QPVEKLEIVECDLEKRDQIGPALGNASVVICCIGASEKEVFDITGPYRIDYMATKNLIDA 198

Query: 193 GRNNGANHFVLLSAICVQKPLLEFQRAKLKFEADLM---KEAEE---DNGFSYSIVRP 244
                 NHF+LL+++   K  + F  A L     ++   ++AEE    +G  Y+IVRP
Sbjct: 199 ATVAKVNHFILLTSLGTNK--VGFPAAILNLFWGVLIWKRKAEEALFASGLPYTIVRP 254


>GSVIVT01021427001 assembled CDS
          Length = 335

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 26/174 (14%)

Query: 86  NILVAGSTGYIGKFVVKELVNRGFNVIAIARERSGIRGKNSKEDTLNDLQGAN----VCF 141
            I VAG+TG  GK +V++L+ +GF V      ++G+R  +  + T     G N    +  
Sbjct: 102 TIFVAGATGNTGKRIVEQLLAKGFAV------KAGVRDLDKAKTTF---PGGNPSLQIVK 152

Query: 142 SDVTNLDILDKSLNDLGVSIDVVVSCLA-SRSGGIKDSWKIDYEATKNSLVAGRNNGANH 200
           +DVT   +  K    +G   D V+      RS  +   WK+D   T N + A R  G N 
Sbjct: 153 ADVTEGSV--KLAEAIGDDSDAVICATGFQRSWDLLAPWKVDNFGTVNLVEACRKLGVNR 210

Query: 201 FVLLSAICVQ--------KPLLEFQRA-KLKFEADLMKEAE-EDNGFSYSIVRP 244
           F+L+S+I V          P   F  A  L   A L  E     +G +Y+I+RP
Sbjct: 211 FILISSILVNGAAMGQILNPAYIFLNAFGLILIAKLQAEQYIRKSGINYTIIRP 264