Jatropha Genome Database

JcCA0145721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145721.10 + phase: 1 /partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017603001 assembled CDS                                       176   5e-45
GSVIVT01017662001 assembled CDS                                       174   1e-44
GSVIVT01034331001 assembled CDS                                        48   2e-06

>GSVIVT01017603001 assembled CDS
          Length = 1609

 Score =  176 bits (445), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 117/174 (67%), Gaps = 25/174 (14%)

Query: 1    CGSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLV 60
            CGSD+ Q DG    PSWIAAG SSG CRL D+RSGN+IASWRAHDGY+TKLAA ED+LLV
Sbjct: 1441 CGSDRMQVDGASALPSWIAAGFSSGSCRLLDVRSGNLIASWRAHDGYITKLAAREDHLLV 1500

Query: 61   SSSLDRTLRIWDLR-----SPLFLKVIQMGYPVSLFGV--KMLFRFPKIRLGFQ------ 107
            SSSLDRTLRIWDLR      P+  +    G  VS F V  + +    K ++G        
Sbjct: 1501 SSSLDRTLRIWDLRRGWSAEPIIFRGHTDG--VSGFSVWGQDIISISKNKIGLSSLSRSA 1558

Query: 108  -------LYPDLLKKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                   + P   +KLY  D G ++LSVLSSISILPFSRLF+VGTEDGYLRICC
Sbjct: 1559 DEEGQHWVTP---QKLYMPDRGTRHLSVLSSISILPFSRLFLVGTEDGYLRICC 1609


>GSVIVT01017662001 assembled CDS
          Length = 1520

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 116/174 (66%), Gaps = 25/174 (14%)

Query: 1    CGSDKTQDDGTFPSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLAAPEDYLLV 60
            CGSD+ Q DG    PSWIAAG SSG CRL D RSGN+IASWRAHDGY+TKLAA ED+LLV
Sbjct: 1352 CGSDRMQVDGASALPSWIAAGFSSGSCRLLDARSGNLIASWRAHDGYITKLAAREDHLLV 1411

Query: 61   SSSLDRTLRIWDLR-----SPLFLKVIQMGYPVSLFGV--KMLFRFPKIRLGFQ------ 107
            SSSLDRTLRIWDLR      P+  +    G  VS F V  + +    K ++G        
Sbjct: 1412 SSSLDRTLRIWDLRRGWSAEPIIFRGHTDG--VSGFSVWGQDIISISKNKIGLSSLSRSA 1469

Query: 108  -------LYPDLLKKLYAVDHGMKNLSVLSSISILPFSRLFVVGTEDGYLRICC 154
                   + P   +KLY  D G ++LSVLSSISILPFSRLF+VGTEDGYLRICC
Sbjct: 1470 DEEGQHWVTP---QKLYMPDRGTRHLSVLSSISILPFSRLFLVGTEDGYLRICC 1520


>GSVIVT01034331001 assembled CDS
          Length = 989

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 13  PSPSWIAAGLSSGHCRLFDLRSGNVIASWRAHDGYVTKLA-APEDYLLVSSSLDRTLRIW 71
           P   W+ +G      +L+DL +G ++  +++H+G +  +   P ++LL + S DRT++ W
Sbjct: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKSHEGQLQCIDFHPHEFLLATGSADRTVKFW 212

Query: 72  DLRS 75
           DL +
Sbjct: 213 DLET 216