Jatropha Genome Database

JcCA0145571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145571.10 - phase: 0 /partial
         (350 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010526001 assembled CDS                                       504   e-143
GSVIVT01011564001 assembled CDS                                        50   1e-06
GSVIVT01000391001 assembled CDS                                        49   5e-06
GSVIVT01035247001 assembled CDS                                        47   1e-05

>GSVIVT01010526001 assembled CDS
          Length = 529

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/311 (81%), Positives = 280/311 (90%)

Query: 40  FRVSANSFLSEYEPLDLLIAPFLTFLLARILRSFLRVIYENGLKATVLGFFMSFIKLVPG 99
            R +ANSFLSEYEPL+LL+AP L  L+ARIL+ F+ V+ E GLKAT+LGF ++ +KLVPG
Sbjct: 1   MRAAANSFLSEYEPLNLLLAPLLALLIARILQCFVGVVNEKGLKATILGFLITSVKLVPG 60

Query: 100 VKSYIDAEKQKVVDQLQSGTKSKRESWRSELPREGLGTRVIEEMKEEKRNDVVWQGKCSG 159
           VK YIDAEKQKVVD+LQSG+KSKR+ W +ELPR GLG  VIE+MKEEKRNDVVWQGKCSG
Sbjct: 61  VKRYIDAEKQKVVDKLQSGSKSKRDGWSTELPRTGLGEGVIEKMKEEKRNDVVWQGKCSG 120

Query: 160 TVYIGGSESEGHFALINEACSMFAHTNPLHSDVFQSVARFEAEVVSMTASLFGGKEKASG 219
           TVYIGGSESEGHF+LINEA SMFAHTNPLH DVFQSV RFE EVV+MTA+L G KEKASG
Sbjct: 121 TVYIGGSESEGHFSLINEAYSMFAHTNPLHMDVFQSVVRFEVEVVAMTAALLGSKEKASG 180

Query: 220 GEICGNMTSGGTESILLAVKSSRDYMKAKKGITRPEMIIPESGHSAYDKAAQYFNIKLWR 279
           G+ICGNMTSGGTESILLAVK+SRDYMKAK+GITRPEMIIPES HSAYDKAAQYFNIKL R
Sbjct: 181 GQICGNMTSGGTESILLAVKTSRDYMKAKRGITRPEMIIPESAHSAYDKAAQYFNIKLLR 240

Query: 280 VPVNKKFEADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGELAFQYGICLHVDLCL 339
           VPVNK+F+ADVK IRRHINKNTILIVGSAPGFPHGIIDPIEELGELA  +GIC HVDLCL
Sbjct: 241 VPVNKEFQADVKGIRRHINKNTILIVGSAPGFPHGIIDPIEELGELASSFGICFHVDLCL 300

Query: 340 GGFVLPFAHNL 350
           GGFVLPFA  L
Sbjct: 301 GGFVLPFARKL 311


>GSVIVT01011564001 assembled CDS
          Length = 567

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 14/178 (7%)

Query: 184 HTNPLHSDVFQSVARFEAEVVSMTASLFGGKEKASGGEICGNMTSGGTESILLA----VK 239
           + N +  D +      +   V+M A LF         +  G  T G +E+++LA     K
Sbjct: 84  NKNYVDMDEYPVTTELQNRCVNMIAKLFNAPSADQTKQAVGVGTVGSSEAMMLAGLAFKK 143

Query: 240 SSRDYMKA-KKGITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKKFEA--DVKAIRRH 296
             ++  KA KK   +P ++   +    ++K A+YF ++L  V + + +     VKA+   
Sbjct: 144 KWQNKRKAQKKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVE-M 202

Query: 297 INKNTILIVGSAPGFPHGIIDPIEELGELAFQ------YGICLHVDLCLGGFVLPFAH 348
           +++NTI +        +G  + ++ L  L  Q      +   +HVD   GGFV PF +
Sbjct: 203 VDENTICVAAILGSTFNGEFEDVKLLNTLLTQKNKRTGWDTPIHVDAASGGFVAPFLY 260


>GSVIVT01000391001 assembled CDS
          Length = 487

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 15/178 (8%)

Query: 184 HTNPLHSDVFQSVARFEAEVVSMTASLFGGKEKASGGEICGNMTSGGTESILLA-VKSSR 242
           + N +  D +  V       V+M A LF      +   I G  T G +E+I+LA +   R
Sbjct: 81  NKNYVDMDEYPLVGPHHNRCVNMIAHLFNAPVGENETAI-GVGTVGSSEAIMLAGLAFKR 139

Query: 243 DYMKAKKG----ITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKKFEA--DVKAIRRH 296
            + + +K       +P ++   +    ++K A+YF ++L  V + + +     VKA+   
Sbjct: 140 KWQQKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEM- 198

Query: 297 INKNTILIVGSAPGFPHGIIDPIEELGELAFQ------YGICLHVDLCLGGFVLPFAH 348
           +++NTI +         G  + ++ L EL  +      +G  +HVD   GGF+ PF H
Sbjct: 199 VDENTICVAAILGSTLTGEFEDVKLLNELLTKKNTETGWGTPIHVDAASGGFIAPFLH 256


>GSVIVT01035247001 assembled CDS
          Length = 488

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%)

Query: 184 HTNPLHSDVFQSVARFEAEVVSMTASLFGGKEKASGGEICGNMTSGGTESILLA-VKSSR 242
           + N +  D +      +   V+M A LF      S   + G  T G +E+I+LA +   R
Sbjct: 81  NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESEAAV-GVGTVGSSEAIMLAGLAFKR 139

Query: 243 DYMKAKKG----ITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKKFEA--DVKAIRRH 296
            +   +K       +P ++   +    ++K A+YF ++L  V +   +     VKA+   
Sbjct: 140 KWQNKRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLTDGYYVMDPVKAVEM- 198

Query: 297 INKNTILIVGSAPGFPHGIIDPIEELGELAFQ------YGICLHVDLCLGGFVLPFAH 348
           +++NTI +        +G  + ++ L +L  +      +   +HVD   GGF+ PF H
Sbjct: 199 VDENTICVAAILGSTLNGEFEDVKHLNDLLTKKNKETGWDTPIHVDAASGGFIAPFLH 256