Jatropha Genome Database

JcCA0145031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0145031.10 + phase: 0 /pseudo
         (679 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028099001 assembled CDS                                       677   0.0  
GSVIVT01027081001 assembled CDS                                       360   1e-99

>GSVIVT01028099001 assembled CDS
          Length = 620

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/695 (56%), Positives = 456/695 (65%), Gaps = 110/695 (15%)

Query: 1   MDSIYLKTGIHGIAPSISVTGGLEARVNASQVSAVGREKSTVAAAPPQKAASRFSFRYPL 60
           MDS+ L  GIHGI+PSISV    + R N +QVSAVGR  STVA    +  +S FSF+Y L
Sbjct: 1   MDSLCLP-GIHGISPSISV----DVRANPTQVSAVGR--STVAQ---KTTSSGFSFKYSL 50

Query: 61  QSLWPGGGQNKRYNGMAIDEAVLVDNGETISGTKEESESRTMGSSEGQNGNWVLKILHVN 120
           +SLWPGG   K Y  + ID+AVLVDNGE      EE  S +  +SEG++ +WV+KILHV 
Sbjct: 51  KSLWPGG---KGYYAIGIDDAVLVDNGEKGGDAVEEGVSGS-AASEGRSESWVMKILHVR 106

Query: 121 SLWKEEEEEGQRSSDGGESNKEGDVEMVNGTATNEEEQDEKCDVCRVKDDDEK-EIEFDR 179
           S W+E+E                                E CD CRV D++EK E++FDR
Sbjct: 107 SRWREQEA-----------------------------SVECCDGCRVDDEEEKKEVQFDR 137

Query: 180 DRFQGCYGRLHXLKRSSMHKCRILE--TWL--IAY--PKXRQEI-----SXNIVASSLXL 228
           D F     RL  L+R S+ + ++    ++L  +AY  P+ +  I         V SS+  
Sbjct: 138 DSFS----RL--LRRVSLPEAKLYAQMSYLGNLAYTIPRIKPGILLKNHGLRFVTSSV-- 189

Query: 229 HQXIKENWQQKQKKFRRQ------------IAASAASYLHSHTKSILPFKSSKVEAEVAS 276
                E  +   K  + Q            IAASAASYLHS T+SILPFKSSK E EVAS
Sbjct: 190 -----EKREMTTKAEKEQGSDELSASAAYQIAASAASYLHSRTRSILPFKSSKAEIEVAS 244

Query: 277 LMXXXXXXXXXXXXXXXXXXXXXDDLSSTRSSPCEWFICDDDQD-TRFFVIQGSESLASW 335
            M                     DDL+S  ++PCEWFICDDD+  TRFFVIQGSESLASW
Sbjct: 245 FMATTDSVTAVVAAKEEVKQAVADDLNSVLTTPCEWFICDDDRTGTRFFVIQGSESLASW 304

Query: 336 QANLLFEPVQFEGLDVLVHRGIYEAAKGIYEQMLPEVRAHLKSCGRRATFRFTXXXXXXX 395
           QANLLFEP+ FEGLDV VHRGIYEAAKGIYEQMLPEV +HL++ G RATFRFT       
Sbjct: 305 QANLLFEPISFEGLDVPVHRGIYEAAKGIYEQMLPEVLSHLQARGERATFRFTGHSLGGS 364

Query: 396 XXXXXXXXXXIRGEVPASSLLPVITFGAPSIMCGGDYLLRKLQLPRSHVQAITMHRDIVP 455
                     IRG VP SSLLPVITFGAPSIMCGGD+LL +L LPRSHVQA+TMHRDIVP
Sbjct: 365 LSLLVNLMLLIRGVVPPSSLLPVITFGAPSIMCGGDHLLYELGLPRSHVQAVTMHRDIVP 424

Query: 456 RAFSCNYPNHVAELLKAVNGSFRNHPCLNNQKLLYAPMGELLILQPDEKFSPHHHLLPSG 515
           RAFSCNYP HVAELLKAVNG+FRNHPCLNNQK+LY+PMGE LILQP+EK SPHHHLLPSG
Sbjct: 425 RAFSCNYPRHVAELLKAVNGNFRNHPCLNNQKVLYSPMGEFLILQPEEKHSPHHHLLPSG 484

Query: 516 CGLYFLSCPLSDSNDSEKLLQAAQSVFLNSPHPLEILSDRSAYGSEGTIQRDHDMNSYLK 575
            GLY LS P+SD+ND+E+ L AA+ VFLNSPHPLEILSD SAYGS+GTIQRDHDM SYL+
Sbjct: 485 SGLYLLSRPVSDANDAERQLLAAKLVFLNSPHPLEILSDSSAYGSDGTIQRDHDMKSYLR 544

Query: 576 SVRSVIRKELNQLRKARREHRRKFWWSLLAPHGINGVGILVERPLVSIKIGQNQFNFSAV 635
           SVRSVIR+E N +RK +RE RRK                             +QFNFS +
Sbjct: 545 SVRSVIRQEQNSIRKTKREQRRK-----------------------------DQFNFSGI 575

Query: 636 LQTGRESLKRFSRLVASQHMHLLVVLLFPARFLLM 670
           LQTGRESLKRFSRLVASQHMHLLVVLLFP R  L+
Sbjct: 576 LQTGRESLKRFSRLVASQHMHLLVVLLFPTRLFLL 610


>GSVIVT01027081001 assembled CDS
          Length = 650

 Score =  360 bits (925), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/377 (51%), Positives = 240/377 (63%), Gaps = 26/377 (6%)

Query: 246 QIAASAASYLHSHTKSIL-PFKSSKV-EAEVASLMXXXXXXXXXXXXXXXXXXXXXDDLS 303
           +IAASAASY+HS TK +L P   S+V ++EVA+ +                     D L 
Sbjct: 277 EIAASAASYVHSCTKDLLSPESPSRVYKSEVAAFVAASTMTAVVAAGEKEKQEAAKD-LQ 335

Query: 304 STRSSPCEWFICDDDQD-TRFFVIQGSESLASWQANLLFEPVQFEGLDVLVHRGIYEAAK 362
           S  S+PCEWF+CDD    TR FVIQGS+SLASWQANL F+P QFEG DV+VHRGIYEAAK
Sbjct: 336 SLHSAPCEWFVCDDSSTYTRCFVIQGSDSLASWQANLFFDPTQFEGTDVIVHRGIYEAAK 395

Query: 363 GIYEQMLPEVRAHLKSCGRRATFRFTXXXXXXXXXXXXXXXXXIRGEVPASSLLPVITFG 422
           GI+EQ +PE+  HL   G RA  +FT                  R  V  S+LLPV+TFG
Sbjct: 396 GIFEQFMPEIIYHLNRYGDRAKLQFTGHSLGGSLSLLVNLMLLSRKVVKPSNLLPVVTFG 455

Query: 423 APSIMCGGDYLLRKLQLPRSHVQAITMHRDIVPRAFSCNYPNHVAELLKAVNGSFRNHPC 482
           +P + CGG+ +L +L L  +HV  + MHRDIVPRAFSCNYPNHVA++LK+++G+FR+HPC
Sbjct: 456 SPFVFCGGERILGELGLDDNHVHCVMMHRDIVPRAFSCNYPNHVAQVLKSLSGAFRSHPC 515

Query: 483 LNNQKLLYAPMGELLILQPDEKFSPHHHLLPSGCGLYFL-----SCPLSDSNDSEKLLQA 537
           LN  KLLY+PMG++ ILQPDEK SP H LLPSG  LY       +CP S           
Sbjct: 516 LNKNKLLYSPMGKIFILQPDEKSSPSHPLLPSGNALYAFDKTQCACPAS----------- 564

Query: 538 AQSVFLNSPHPLEILSDRSAYGSEGTIQRDHDMNSYLKSVRSVIRKELNQ-LRKARREHR 596
           A   F+N PHPLE LSD +AYGSEGTI RDHD ++YLK+V  V+R+     LR+ RR+  
Sbjct: 565 AIRAFINCPHPLETLSDPTAYGSEGTILRDHDSSNYLKAVNGVLRQHTKTVLRRVRRQG- 623

Query: 597 RKFWWSLL---APHGIN 610
               W LL   +PH  N
Sbjct: 624 -NLMWPLLTSPSPHAWN 639