Jatropha Genome Database

JcCA0144801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144801.10 + phase: 0 
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007976001 assembled CDS                                       442   e-125
GSVIVT01001810001 assembled CDS                                       120   7e-28

>GSVIVT01007976001 assembled CDS
          Length = 290

 Score =  442 bits (1137), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/230 (93%), Positives = 221/230 (96%)

Query: 6   RKIHTVVKATARVDKFSKSDIIVSPSILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFV 65
           RK  + VKA+ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVE+AGCDWIHVDVMDGRFV
Sbjct: 39  RKFSSTVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV 98

Query: 66  PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT 125
           PNITIGPL+V ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT
Sbjct: 99  PNITIGPLIVGALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT 158

Query: 126 VNQIKDLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQGFIESQVKKISDLR 185
           +NQIK LGAKAGVVLNPATPLS IEYVLDVVDLVLIMSVNPGFGGQ FIESQVKKISDLR
Sbjct: 159 INQIKSLGAKAGVVLNPATPLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 218

Query: 186 RLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 235
           R+CAEKGVNPWIEVDGGVGP NAYKVIEAGANALVAGSAVFGAKDYAE +
Sbjct: 219 RICAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEGM 268


>GSVIVT01001810001 assembled CDS
          Length = 291

 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 13/213 (6%)

Query: 32  ILSANFAKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM 91
           IL + F+ +   V A+E        +      FVPN+TIG  V+++LR  T+  LD HLM
Sbjct: 84  ILISFFSLMNRSVDAIEAYA-----LRCPSRHFVPNLTIGAPVIESLRKHTNAYLDCHLM 138

Query: 92  IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKDLGAKAGVVLNPATPLSAIEY 151
           +  P   V    KAGA   + H E S   +    V +I+  G + GV L P TP+  +  
Sbjct: 139 VTNPLDYVEPLGKAGASGFTFHVEVSKE-NWQELVERIRSKGMRPGVALKPGTPIEEVYP 197

Query: 152 VLD---VVDLVLIMSVNPGFGGQGFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPKNA 208
           +++    V++VL+M+V PGFGGQ F+   + K+  LR+          IEVDGG+GP   
Sbjct: 198 LVEGENPVEMVLVMTVEPGFGGQKFMPEMMDKVRALRKKYPSLD----IEVDGGLGPSTI 253

Query: 209 YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 241
                AGAN +VAGS+VFGA    + I  ++ S
Sbjct: 254 DMAASAGANCIVAGSSVFGAPKPEQVISLLRKS 286