Jatropha Genome Database

JcCA0144471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144471.10 + phase: 0 
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034255001 assembled CDS                                       241   1e-64

>GSVIVT01034255001 assembled CDS
          Length = 197

 Score =  241 bits (615), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 109/143 (76%), Positives = 127/143 (88%)

Query: 13  ASYTYWVREATADAAPLPLPKKLSTNDLITSQSQPPTLGSVWNRAGTWEEKNLNKWATDR 72
           +SYTYWVREA  DAAPLP+P+KL+ +DL++ QS    LGSVWN+AGTWEEKNLNKWA++R
Sbjct: 12  SSYTYWVREAREDAAPLPVPRKLTQDDLLSQQSHTSALGSVWNKAGTWEEKNLNKWASNR 71

Query: 73  IKELLVSVGSLEFSCGKAEITEVSKCLGDAFLVTVRNKKRVGYTYELTLKIKGEWTVKEE 132
           IKELL+SVGSL  S GKAEITEVSKC GDA+LVTVRNKKRVGYTYELTLK +GEW ++EE
Sbjct: 72  IKELLISVGSLVLSGGKAEITEVSKCSGDAYLVTVRNKKRVGYTYELTLKFQGEWIIREE 131

Query: 133 KKNVKAHIDIPEFSFGELDDLQV 155
           KK +K H+DIPEFSFGELDDLQ+
Sbjct: 132 KKMIKGHVDIPEFSFGELDDLQI 154