Jatropha Genome Database

JcCA0144441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144441.10 - phase: 0 
         (366 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029062001 assembled CDS                                       513   e-146
GSVIVT01028557001 assembled CDS                                       428   e-120
GSVIVT01007332001 assembled CDS                                        97   2e-20
GSVIVT01030112001 assembled CDS                                        95   4e-20

>GSVIVT01029062001 assembled CDS
          Length = 461

 Score =  513 bits (1322), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/340 (75%), Positives = 275/340 (80%), Gaps = 20/340 (5%)

Query: 1   MEKAINRQRVLLDHLRPXXXXXXXXXXXXXXXACLAGDSAAYQRTAVFGDDVVIVAAYRT 60
           MEKAINRQRVLL HL P                C+AGDSAAYQRT+VFGDDVVIVAAYRT
Sbjct: 1   MEKAINRQRVLLQHLSPSSSAAEDESSLSAS-VCVAGDSAAYQRTSVFGDDVVIVAAYRT 59

Query: 61  PLCKSKRGGFKDTHADDLLAPVLKALIEKTNLNASEVGDIVVGTVLAPGSQRASECRMAA 120
            LCKSKRGGFKDT+ DDLLAPVL+AL+EKTNLN +EVGDIVVGTVLAPGSQRASECRMAA
Sbjct: 60  ALCKSKRGGFKDTYPDDLLAPVLRALLEKTNLNPNEVGDIVVGTVLAPGSQRASECRMAA 119

Query: 121 FYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGKIIITISIAYLHFAIMVLGI 180
           FYAGFPETVPVRTVNRQCSSGLQ           GFYDIG                   I
Sbjct: 120 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIG-------------------I 160

Query: 181 GAGLESMTINQMAWDGDVNPKVKIFEKAQNCLLPMGVTSENVAHRFGVTRQEQDQAAVES 240
           GAGLESMT N MAW+G +NPKVK F +AQ+CLLPMG+TSENVAHRFGVTRQEQDQAAVES
Sbjct: 161 GAGLESMTANPMAWEGSINPKVKEFVQAQDCLLPMGITSENVAHRFGVTRQEQDQAAVES 220

Query: 241 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSLSDLAKLKPVFK 300
           H++       GKFKDEIIPV+TKIVDPKTGDEK VTISVDDGIRPN ++SDLAKLKPVFK
Sbjct: 221 HKRAAAATATGKFKDEIIPVSTKIVDPKTGDEKLVTISVDDGIRPNATMSDLAKLKPVFK 280

Query: 301 KDGTTTAGNSSQITDGAGAVLLMKRSVAMRKGLPILGVFR 340
           K+GTTTAGNSSQ++DGAGAVLLMKRSVAMRKGLPILGVFR
Sbjct: 281 KNGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 320


>GSVIVT01028557001 assembled CDS
          Length = 443

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/343 (64%), Positives = 256/343 (74%), Gaps = 24/343 (6%)

Query: 1   MEKAINRQRVLLDHLRPXXXXXXXXXXXXXXXA---CLAGDSAAYQRTAVFGDDVVIVAA 57
           MEKAINRQRVLL+HLRP               +   CLAG+ A     +  GDD+V+VAA
Sbjct: 1   MEKAINRQRVLLEHLRPSSSSPSPSPINESSLSASICLAGNRATNPVDS--GDDIVVVAA 58

Query: 58  YRTPLCKSKRGGFKDTHADDLLAPVLKALIEKTNLNASEVGDIVVGTVLAPGSQRASECR 117
            RT +CK+KRGGFKDT  DD+LAPVLKALIEKTN++ SEVGDIVVGTVLAPGSQRA ECR
Sbjct: 59  CRTAICKAKRGGFKDTLPDDILAPVLKALIEKTNVDPSEVGDIVVGTVLAPGSQRAIECR 118

Query: 118 MAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGKIIITISIAYLHFAIMV 177
           MAAFYAGFP+TVP+RTVNRQCSSGLQ           G YDIG                 
Sbjct: 119 MAAFYAGFPDTVPIRTVNRQCSSGLQAVVDVVAAIRAGLYDIG----------------- 161

Query: 178 LGIGAGLESMTINQMAWDGDVNPKVKIFEKAQNCLLPMGVTSENVAHRFGVTRQEQDQAA 237
             IGAGLESMT + +A    VNPKV IF +A++CLLPMG+TSENVA R+GVTRQEQDQAA
Sbjct: 162 --IGAGLESMTTDNIAGVTTVNPKVDIFAQARDCLLPMGLTSENVAKRYGVTRQEQDQAA 219

Query: 238 VESHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSLSDLAKLKP 297
           VESHR+       GKFK+EIIPV+TKIVDPKTG+ KPV ISVDDGIRP+T++  LAKLKP
Sbjct: 220 VESHRRAAAASAAGKFKEEIIPVSTKIVDPKTGEVKPVIISVDDGIRPDTNMKSLAKLKP 279

Query: 298 VFKKDGTTTAGNSSQITDGAGAVLLMKRSVAMRKGLPILGVFR 340
            F KDG+TTAGN+SQ++DGAG  LLMKRS+AM++GLPILG+FR
Sbjct: 280 AFAKDGSTTAGNASQVSDGAGGALLMKRSLAMKRGLPILGLFR 322


>GSVIVT01007332001 assembled CDS
          Length = 411

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 33/290 (11%)

Query: 51  DVVIVAAYRTPLCKSKRGGF----KDTHADDLLAPVLKALIEKTNLNASEVGDIVVGTVL 106
           DV IV   RTP+     GGF        A  L +  ++  + + N++ S V ++  G VL
Sbjct: 11  DVCIVGVARTPM-----GGFLGFLSSLSATKLGSIAIRGALRRANIDPSLVQEVFFGNVL 65

Query: 107 APGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI----GKI 162
           +    +A   R AA  AG P +V   T+N+ C+SG++           G  D+    G  
Sbjct: 66  SANLGQA-PARQAALGAGIPNSVVCTTINKVCASGMKAIMFAAQSIQLGVNDVVVAGGME 124

Query: 163 IITISIAYLHFAIMVLGIGAGLESMTINQMAWDGDVNPKVKIFEKAQNCLLPMGVTSENV 222
            ++ +  YL +A     +G       ++ M  DG       +++   +    MG+ +E  
Sbjct: 125 SMSNAPKYLVYARNGSRLG---HDTIVDGMIKDG-------LWDVYND--FGMGICAEIC 172

Query: 223 AHRFGVTRQEQDQAAVESHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 282
           A +  +TR+EQD  +++S  +       G F  EIIP     V+   G  KP T+   D 
Sbjct: 173 ADQHTITREEQDSYSIQSFERGISAQNNGAFAWEIIP-----VEVSGGRGKPSTLVDKDE 227

Query: 283 IRPNTSLSDLAKLKPVFKKDGTTTAGNSSQITDGAGAVLLM--KRSVAMR 330
                  + L KL+P FK  G+ TAGN+S I+DGA A++L+  K++V +R
Sbjct: 228 GLGKFDAAKLRKLRPSFKDGGSVTAGNASSISDGAAALVLVSGKKAVELR 277


>GSVIVT01030112001 assembled CDS
          Length = 404

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 32/295 (10%)

Query: 51  DVVIVAAYRTPLCKSKRGGFKDT----HADDLLAPVLKALIEKTNLNASEVGDIVVGTVL 106
           DV IV   RTP+     GGF  T     A  L +  ++A +++ N++AS V ++  G VL
Sbjct: 13  DVCIVGVARTPM-----GGFLGTLSSLSATKLGSIAIEAALKRANVDASLVQEVFFGNVL 67

Query: 107 APGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDI--GKIII 164
           +    +A   R AA  AG P +V   T+N+ C+SG++           G  DI     + 
Sbjct: 68  SANLGQA-PARQAALGAGIPNSVVCTTINKVCASGMKATMLAAQSIQLGVNDIVVSGGME 126

Query: 165 TISIAYLHFAIMVLGIGAGLESMTINQMAWDG--DVNPKVKIFEKAQNCLLPMGVTSENV 222
           ++S    + A    G   G +S+ ++ M  DG  DV                MGV +E  
Sbjct: 127 SMSNVPKYLAEARKGSRFGHDSL-VDGMLKDGLWDVYSDTG-----------MGVCAELC 174

Query: 223 AHRFGVTRQEQDQAAVESHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 282
           A    ++R+EQD  A+ S  +       G F  EI+PV     +   G  +P TI   D 
Sbjct: 175 ADNHVISREEQDAYAIHSFERGIAAQDGGAFAWEIVPV-----EVSGGRGRPSTIVDKDE 229

Query: 283 IRPNTSLSDLAKLKPVFKKDG-TTTAGNSSQITDGAGAVLLMKRSVAMRKGLPIL 336
                    L KL+P FK++G + TAGN+S I+DGA A++L+    A++ GL ++
Sbjct: 230 GLGKFDPVKLKKLRPSFKENGGSVTAGNASSISDGAAALVLVSGEKALQLGLSVI 284