Jatropha Genome Database

JcCA0144381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0144381.10 - phase: 0 /partial
         (211 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038260001 assembled CDS                                       372   e-104

>GSVIVT01038260001 assembled CDS
          Length = 410

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/211 (83%), Positives = 195/211 (92%)

Query: 1   MGKAVIKAADTAGLQILSVSFGSAEESGQTVQVCGKDIKIHGPSEREDVLASLYDEYPNL 60
           MGKAVI+AA +AGL ++ VSF  AEESGQTV+VCGK+IK+HGPS RE++LAS+ DEYPNL
Sbjct: 147 MGKAVIQAAVSAGLHLVPVSFSCAEESGQTVEVCGKEIKLHGPSGRENILASVVDEYPNL 206

Query: 61  IVVDYTVPSAVNDNANLYCKVGVPFVMGTTGGDRDLLYKTVEDSKVYAVISPQMGKQVVA 120
           IVVDYTVP AVNDNA LYCKVGVPFVMGTTGGDR+ LYKTV+DS VYAVISPQMGKQVVA
Sbjct: 207 IVVDYTVPDAVNDNAELYCKVGVPFVMGTTGGDRERLYKTVKDSNVYAVISPQMGKQVVA 266

Query: 121 FLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMNQIQMI 180
           FLAAMEIMAEQFPGAFSGYSLQV+ESHQA KLDTSGTAKAVISCFQKLGV F ++QIQ I
Sbjct: 267 FLAAMEIMAEQFPGAFSGYSLQVMESHQASKLDTSGTAKAVISCFQKLGVPFKLDQIQQI 326

Query: 181 RDPKLQIEMVGVPEDHLSGHAFHMYHLTSPD 211
           RDPK Q+EMVGVPE++L+GHAFHMYHLTSPD
Sbjct: 327 RDPKQQVEMVGVPEEYLNGHAFHMYHLTSPD 357