Jatropha Genome Database

JcCA0143661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0143661.10 + phase: 0 /pseudo/partial
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013167001 assembled CDS                                       223   7e-59

>GSVIVT01013167001 assembled CDS
          Length = 340

 Score =  223 bits (567), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 108/113 (95%)

Query: 109 GVGVDALVKDGLLNKLKGGPLFWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLAHKAIN 168
           GVGVDALVKDGLLNKLK GPL+WIDTADKQPCIGTGGMIPWKL VTGKLFHSGL HKAIN
Sbjct: 75  GVGVDALVKDGLLNKLKEGPLYWIDTADKQPCIGTGGMIPWKLRVTGKLFHSGLPHKAIN 134

Query: 169 PLELAMEALKEIQSRFYRDFPPHPKEKVYGFATPSTMKPTQWSYPGGGINQIP 221
           PLELAM+A+KEIQ RFYRDFPPHPKE++YGFATPSTMKPTQW YPGGGINQIP
Sbjct: 135 PLELAMDAVKEIQLRFYRDFPPHPKEQIYGFATPSTMKPTQWHYPGGGINQIP 187